Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4373 | 5' | -50.7 | NC_001720.1 | + | 26692 | 1.13 | 0.001225 |
Target: 5'- uUGACCGCAAAAAGGCGGGCGAAAUCCu -3' miRNA: 3'- -ACUGGCGUUUUUCCGCCCGCUUUAGG- -5' |
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4373 | 5' | -50.7 | NC_001720.1 | + | 25793 | 0.77 | 0.317557 |
Target: 5'- -cGCCGCGGGugcGGCGGGCGGcucUCCg -3' miRNA: 3'- acUGGCGUUUuu-CCGCCCGCUuu-AGG- -5' |
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4373 | 5' | -50.7 | NC_001720.1 | + | 32086 | 0.76 | 0.360445 |
Target: 5'- gUGGCCGCGGAcauGGGcCGGGCGc-AUCUg -3' miRNA: 3'- -ACUGGCGUUUu--UCC-GCCCGCuuUAGG- -5' |
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4373 | 5' | -50.7 | NC_001720.1 | + | 14108 | 0.76 | 0.369493 |
Target: 5'- gGAgCuCGGGGAGGCGGGCGcAAAUCUc -3' miRNA: 3'- aCUgGcGUUUUUCCGCCCGC-UUUAGG- -5' |
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4373 | 5' | -50.7 | NC_001720.1 | + | 19407 | 0.73 | 0.488304 |
Target: 5'- cUGcCCGaCGGGcacGGGGCGGGCGAAgacaacgGUCCc -3' miRNA: 3'- -ACuGGC-GUUU---UUCCGCCCGCUU-------UAGG- -5' |
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4373 | 5' | -50.7 | NC_001720.1 | + | 27554 | 0.73 | 0.500204 |
Target: 5'- cGGCCGUugguuAGAGGGCGGaGCaGAAGaCCg -3' miRNA: 3'- aCUGGCGu----UUUUCCGCC-CG-CUUUaGG- -5' |
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4373 | 5' | -50.7 | NC_001720.1 | + | 22516 | 0.72 | 0.577354 |
Target: 5'- uUGACgauaGCu--GAGGCGGGCacgugcggaucgaGAAAUCCu -3' miRNA: 3'- -ACUGg---CGuuuUUCCGCCCG-------------CUUUAGG- -5' |
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4373 | 5' | -50.7 | NC_001720.1 | + | 32609 | 0.7 | 0.659094 |
Target: 5'- aGACCGgGAAugGAGGgaaGGaacuGCGAGAUCCu -3' miRNA: 3'- aCUGGCgUUU--UUCCg--CC----CGCUUUAGG- -5' |
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4373 | 5' | -50.7 | NC_001720.1 | + | 33456 | 0.7 | 0.693451 |
Target: 5'- -cGCCGCGAAGAcaucgaagcGGCGGcGCGAcgaGGUCa -3' miRNA: 3'- acUGGCGUUUUU---------CCGCC-CGCU---UUAGg -5' |
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4373 | 5' | -50.7 | NC_001720.1 | + | 20733 | 0.69 | 0.738286 |
Target: 5'- gGACCGCAca---GCaGGGCGAAG-CCu -3' miRNA: 3'- aCUGGCGUuuuucCG-CCCGCUUUaGG- -5' |
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4373 | 5' | -50.7 | NC_001720.1 | + | 1233 | 0.68 | 0.801748 |
Target: 5'- aGACCGCG---GGGCgucGGGUuucGGGUCCa -3' miRNA: 3'- aCUGGCGUuuuUCCG---CCCGc--UUUAGG- -5' |
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4373 | 5' | -50.7 | NC_001720.1 | + | 9925 | 0.68 | 0.801748 |
Target: 5'- aUGACgGUGAccuGGGCGGGCuuaAAGUCg -3' miRNA: 3'- -ACUGgCGUUuu-UCCGCCCGc--UUUAGg -5' |
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4373 | 5' | -50.7 | NC_001720.1 | + | 12027 | 0.68 | 0.805759 |
Target: 5'- aGACCGUAAcgGGGGcGCGGGCagcggGAcagguaugcaccaccGGUCCg -3' miRNA: 3'- aCUGGCGUU--UUUC-CGCCCG-----CU---------------UUAGG- -5' |
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4373 | 5' | -50.7 | NC_001720.1 | + | 20682 | 0.68 | 0.811715 |
Target: 5'- cGACuCGCAAGAAGGUcagccgccGCGAggAGUCCc -3' miRNA: 3'- aCUG-GCGUUUUUCCGcc------CGCU--UUAGG- -5' |
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4373 | 5' | -50.7 | NC_001720.1 | + | 11171 | 0.67 | 0.821475 |
Target: 5'- cGGCUGCAGAGGGuGauGGCGcc-UCCu -3' miRNA: 3'- aCUGGCGUUUUUC-CgcCCGCuuuAGG- -5' |
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4373 | 5' | -50.7 | NC_001720.1 | + | 1042 | 0.67 | 0.825318 |
Target: 5'- uUGGCCGCcAAAuuuuucauugacgucGGaGCGGGUGuuaucGAUCCc -3' miRNA: 3'- -ACUGGCGuUUU---------------UC-CGCCCGCu----UUAGG- -5' |
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4373 | 5' | -50.7 | NC_001720.1 | + | 15347 | 0.67 | 0.831016 |
Target: 5'- cUGGCCuuGCGuguuGAGGGUgaGGGUGcuGUCCg -3' miRNA: 3'- -ACUGG--CGUu---UUUCCG--CCCGCuuUAGG- -5' |
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4373 | 5' | -50.7 | NC_001720.1 | + | 11899 | 0.67 | 0.831016 |
Target: 5'- --cCCGagGAGAAGGUGcGGCGGcggcAAUCCg -3' miRNA: 3'- acuGGCg-UUUUUCCGC-CCGCU----UUAGG- -5' |
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4373 | 5' | -50.7 | NC_001720.1 | + | 32207 | 0.67 | 0.840327 |
Target: 5'- gUGGCuUGCAAGAAGGCGuccucauGCGAAcggCCu -3' miRNA: 3'- -ACUG-GCGUUUUUCCGCc------CGCUUua-GG- -5' |
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4373 | 5' | -50.7 | NC_001720.1 | + | 42740 | 0.67 | 0.840327 |
Target: 5'- cGACCGUAAc-AGcCGGGCGGAAa-- -3' miRNA: 3'- aCUGGCGUUuuUCcGCCCGCUUUagg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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