miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
470 3' -58.6 AC_000013.1 + 13749 0.66 0.515816
Target:  5'- gCGCGCggCCGagcuugaaacgcccGGCcgAGCAG-ACCGCGu -3'
miRNA:   3'- gGCGCGuaGGC--------------CCG--UCGUCaUGGUGC- -5'
470 3' -58.6 AC_000013.1 + 44241 0.66 0.498321
Target:  5'- -gGCGCcgGUCCGGGCGGaguCGGUAgCGgGu -3'
miRNA:   3'- ggCGCG--UAGGCCCGUC---GUCAUgGUgC- -5'
470 3' -58.6 AC_000013.1 + 34203 0.67 0.448518
Target:  5'- aCGCGUAUCgcgguugugaCGGGCGGUGuaGCCGCu -3'
miRNA:   3'- gGCGCGUAG----------GCCCGUCGUcaUGGUGc -5'
470 3' -58.6 AC_000013.1 + 19656 0.67 0.448518
Target:  5'- cCCGUGaCGUCCucGGCucccGCGGUGCC-CGa -3'
miRNA:   3'- -GGCGC-GUAGGc-CCGu---CGUCAUGGuGC- -5'
470 3' -58.6 AC_000013.1 + 19971 0.67 0.419991
Target:  5'- aCCGCGaccCCGcGGCuGCAGUACuuuCACa -3'
miRNA:   3'- -GGCGCguaGGC-CCGuCGUCAUG---GUGc -5'
470 3' -58.6 AC_000013.1 + 13506 0.67 0.417199
Target:  5'- aCGCGaagcCGUCCgcggaagcggacgaGGGCAGCGcGUGCUGCGc -3'
miRNA:   3'- gGCGC----GUAGG--------------CCCGUCGU-CAUGGUGC- -5'
470 3' -58.6 AC_000013.1 + 39494 0.67 0.410728
Target:  5'- cCCGCGCcagagacuaaGUCCGGcGCGgguGCAGUggcggcccucgGCCGCc -3'
miRNA:   3'- -GGCGCG----------UAGGCC-CGU---CGUCA-----------UGGUGc -5'
470 3' -58.6 AC_000013.1 + 39359 0.67 0.410728
Target:  5'- cCCGCGCcagagacuaaGUCCGGcGCGgguGCAGUggcggcccucgGCCGCc -3'
miRNA:   3'- -GGCGCG----------UAGGCC-CGU---CGUCA-----------UGGUGc -5'
470 3' -58.6 AC_000013.1 + 39629 0.67 0.410728
Target:  5'- cCCGCGCcagagacuaaGUCCGGcGCGgguGCAGUggcggcccucgGCCGCc -3'
miRNA:   3'- -GGCGCG----------UAGGCC-CGU---CGUCA-----------UGGUGc -5'
470 3' -58.6 AC_000013.1 + 39764 0.67 0.410728
Target:  5'- cCCGCGCcagagacuaaGUCCGGcGCGgguGCAGUggcggcccucgGCCGCc -3'
miRNA:   3'- -GGCGCG----------UAGGCC-CGU---CGUCA-----------UGGUGc -5'
470 3' -58.6 AC_000013.1 + 39899 0.67 0.410728
Target:  5'- cCCGCGCcagagacuaaGUCCGGcGCGgguGCAGUggcggcccucgGCCGCc -3'
miRNA:   3'- -GGCGCG----------UAGGCC-CGU---CGUCA-----------UGGUGc -5'
470 3' -58.6 AC_000013.1 + 40034 0.67 0.410728
Target:  5'- cCCGCGCcagagacuaaGUCCGGcGCGgguGCAGUggcggcccucgGCCGCc -3'
miRNA:   3'- -GGCGCG----------UAGGCC-CGU---CGUCA-----------UGGUGc -5'
470 3' -58.6 AC_000013.1 + 40168 0.67 0.410728
Target:  5'- cCCGCGCcagagacuaaGUCCGGcGCGgguGCAGUggcggcccucgGCCGCc -3'
miRNA:   3'- -GGCGCG----------UAGGCC-CGU---CGUCA-----------UGGUGc -5'
470 3' -58.6 AC_000013.1 + 40303 0.67 0.410728
Target:  5'- cCCGCGCcagagacuaaGUCCGGcGCGgguGCAGUggcggcccucgGCCGCc -3'
miRNA:   3'- -GGCGCG----------UAGGCC-CGU---CGUCA-----------UGGUGc -5'
470 3' -58.6 AC_000013.1 + 40438 0.67 0.410728
Target:  5'- cCCGCGCcagagacuaaGUCCGGcGCGgguGCAGUggcggcccucgGCCGCc -3'
miRNA:   3'- -GGCGCG----------UAGGCC-CGU---CGUCA-----------UGGUGc -5'
470 3' -58.6 AC_000013.1 + 39224 0.67 0.410728
Target:  5'- cCCGCGCcagagacuaaGUCCGGcGCGgguGCAGUggcggcccucgGCCGCc -3'
miRNA:   3'- -GGCGCG----------UAGGCC-CGU---CGUCA-----------UGGUGc -5'
470 3' -58.6 AC_000013.1 + 38955 0.67 0.410728
Target:  5'- cCCGCGCcagagacuaaGUCCGGcGCGgguGCAGUggcggcccucgGCCGCc -3'
miRNA:   3'- -GGCGCG----------UAGGCC-CGU---CGUCA-----------UGGUGc -5'
470 3' -58.6 AC_000013.1 + 16823 0.67 0.410728
Target:  5'- aCCGCG-AUCCGGuGCcuccaggcacGGCAGcucCCACGa -3'
miRNA:   3'- -GGCGCgUAGGCC-CG----------UCGUCau-GGUGC- -5'
470 3' -58.6 AC_000013.1 + 16478 0.68 0.401594
Target:  5'- uCCGUGCAccgucgCCGGGUAGCguugaGGaGCCAUc -3'
miRNA:   3'- -GGCGCGUa-----GGCCCGUCG-----UCaUGGUGc -5'
470 3' -58.6 AC_000013.1 + 39089 0.68 0.401594
Target:  5'- cCCGCGCcagagacaaGUCCGGcGCGgguGCAGUggcggcccucgGCCGCc -3'
miRNA:   3'- -GGCGCG---------UAGGCC-CGU---CGUCA-----------UGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.