miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
477	5'	-56.6	AC_000013.1	+	8066	0.66	0.601476
	Target:  5'- ---cGGUGUCC-CCguagagggUC-UGGGGGUCCc -3' miRNA:   3'- ucuaCCACGGGuGG--------AGuAUCCCCAGG- -5'
477	5'	-56.6	AC_000013.1	+	23813	0.66	0.557577
	Target:  5'- cGGAUGGU-CCCACCUCucgcuccGGUCg -3' miRNA:   3'- -UCUACCAcGGGUGGAGuaucc--CCAGg -5'
477	5'	-56.6	AC_000013.1	+	37816	0.67	0.493672
	Target:  5'- uAGggGGUGgUCGCCUguaCAggGGGGuGUCCa -3' miRNA:   3'- -UCuaCCACgGGUGGA---GUa-UCCC-CAGG- -5'
477	5'	-56.6	AC_000013.1	+	37783	0.67	0.493672
	Target:  5'- uAGggGGUGgUCGCCUguaCAggGGGGuGUCCa -3' miRNA:   3'- -UCuaCCACgGGUGGA---GUa-UCCC-CAGG- -5'
477	5'	-56.6	AC_000013.1	+	37750	0.67	0.493672
	Target:  5'- uAGggGGUGgUCGCCUguaCAggGGGGuGUCCa -3' miRNA:   3'- -UCuaCCACgGGUGGA---GUa-UCCC-CAGG- -5'
477	5'	-56.6	AC_000013.1	+	37717	0.67	0.493672
	Target:  5'- uAGggGGUGgUCGCCUguaCAggGGGGuGUCCa -3' miRNA:   3'- -UCuaCCACgGGUGGA---GUa-UCCC-CAGG- -5'
477	5'	-56.6	AC_000013.1	+	25569	0.71	0.310948
	Target:  5'- uAGGUGGUG-CCGCCUCu---GGGUCg -3' miRNA:   3'- -UCUACCACgGGUGGAGuaucCCCAGg -5'
477	5'	-56.6	AC_000013.1	+	37927	1.11	0.00041
	Target:  5'- gAGAUGGUGCCCACCUCAUAGGGGUCCc -3' miRNA:   3'- -UCUACCACGGGUGGAGUAUCCCCAGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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