miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
481 5' -55.7 AC_000013.1 + 16449 0.66 0.621802
Target:  5'- uCCGCCACUAGacuCGGCcGCGG-ACg -3'
miRNA:   3'- cGGUGGUGGUCguuGUCGuUGCCgUG- -5'
481 5' -55.7 AC_000013.1 + 10186 0.66 0.610532
Target:  5'- uGCuCGCCACCG--AACucguGgAACGGCGCg -3'
miRNA:   3'- -CG-GUGGUGGUcgUUGu---CgUUGCCGUG- -5'
481 5' -55.7 AC_000013.1 + 12183 0.66 0.599282
Target:  5'- gGCUACgAcCCAGgGACAGaCAAgGGCGa -3'
miRNA:   3'- -CGGUGgU-GGUCgUUGUC-GUUgCCGUg -5'
481 5' -55.7 AC_000013.1 + 13810 0.66 0.599282
Target:  5'- aGCUGCCACCAaacGCGuuuGCGuACGGCGu -3'
miRNA:   3'- -CGGUGGUGGU---CGUuguCGU-UGCCGUg -5'
481 5' -55.7 AC_000013.1 + 43521 0.66 0.588062
Target:  5'- -aCAgCAgCCAGCAGCagGGCAACGG-ACu -3'
miRNA:   3'- cgGUgGU-GGUCGUUG--UCGUUGCCgUG- -5'
481 5' -55.7 AC_000013.1 + 26563 0.66 0.581348
Target:  5'- cCCGCUucuguuugcuuugcaGCUAGCAgggauggggGCGGUAACGGCGa -3'
miRNA:   3'- cGGUGG---------------UGGUCGU---------UGUCGUUGCCGUg -5'
481 5' -55.7 AC_000013.1 + 18939 0.66 0.565747
Target:  5'- --aAUCGCCGGC-ACGGCcguCGGCAUg -3'
miRNA:   3'- cggUGGUGGUCGuUGUCGuu-GCCGUG- -5'
481 5' -55.7 AC_000013.1 + 28123 0.67 0.543657
Target:  5'- cGCUGgCACCGGUGGgAGCgGACGGUAa -3'
miRNA:   3'- -CGGUgGUGGUCGUUgUCG-UUGCCGUg -5'
481 5' -55.7 AC_000013.1 + 12270 0.67 0.543657
Target:  5'- gGCgCGCCGgCGGUGGCGGgGACGGagGCg -3'
miRNA:   3'- -CG-GUGGUgGUCGUUGUCgUUGCCg-UG- -5'
481 5' -55.7 AC_000013.1 + 32460 0.67 0.540367
Target:  5'- cCCGCCGCCGuaAACAaCGugggauuuguucccGCGGCACa -3'
miRNA:   3'- cGGUGGUGGUcgUUGUcGU--------------UGCCGUG- -5'
481 5' -55.7 AC_000013.1 + 7803 0.67 0.540367
Target:  5'- -aCGCUGCUGGCAGaGGCAcgaagaccagucguACGGCGCg -3'
miRNA:   3'- cgGUGGUGGUCGUUgUCGU--------------UGCCGUG- -5'
481 5' -55.7 AC_000013.1 + 1441 0.67 0.532717
Target:  5'- aGCgGCCGCCAGUugAACGGCGAaaucCACu -3'
miRNA:   3'- -CGgUGGUGGUCG--UUGUCGUUgcc-GUG- -5'
481 5' -55.7 AC_000013.1 + 11023 0.67 0.511084
Target:  5'- -aCACgGCCGGUuGCAGacggAACGGUACg -3'
miRNA:   3'- cgGUGgUGGUCGuUGUCg---UUGCCGUG- -5'
481 5' -55.7 AC_000013.1 + 12209 0.67 0.511084
Target:  5'- cGCCACCGCCGGC-GC-GCccCGcGUACc -3'
miRNA:   3'- -CGGUGGUGGUCGuUGuCGuuGC-CGUG- -5'
481 5' -55.7 AC_000013.1 + 12631 0.68 0.489824
Target:  5'- aGCCACCucuCgGGUAGCGGC-GCGGgAg -3'
miRNA:   3'- -CGGUGGu--GgUCGUUGUCGuUGCCgUg -5'
481 5' -55.7 AC_000013.1 + 27993 0.68 0.448612
Target:  5'- aGCCACU-UCGGCGGCgAGCGuCGGCGa -3'
miRNA:   3'- -CGGUGGuGGUCGUUG-UCGUuGCCGUg -5'
481 5' -55.7 AC_000013.1 + 44944 0.69 0.43861
Target:  5'- uGCUGCCAuCUAGCgGGCGGgAGCGGUAg -3'
miRNA:   3'- -CGGUGGU-GGUCG-UUGUCgUUGCCGUg -5'
481 5' -55.7 AC_000013.1 + 2523 0.69 0.428737
Target:  5'- -aCACCuggcgacacaagGCCAcGCAGCGGU-GCGGCACg -3'
miRNA:   3'- cgGUGG------------UGGU-CGUUGUCGuUGCCGUG- -5'
481 5' -55.7 AC_000013.1 + 7444 0.69 0.40939
Target:  5'- cGCCGCCGCC-GCgAGCAGCcugAGgGGgGCu -3'
miRNA:   3'- -CGGUGGUGGuCG-UUGUCG---UUgCCgUG- -5'
481 5' -55.7 AC_000013.1 + 38164 0.69 0.40939
Target:  5'- gGCCugUuucCUAGUAACGGgGGCGGUGCu -3'
miRNA:   3'- -CGGugGu--GGUCGUUGUCgUUGCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.