miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
498 3' -63.6 AC_000013.1 + 39195 0.66 0.282057
Target:  5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3'
miRNA:   3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5'
498 3' -63.6 AC_000013.1 + 39465 0.66 0.282057
Target:  5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3'
miRNA:   3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5'
498 3' -63.6 AC_000013.1 + 39330 0.66 0.282057
Target:  5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3'
miRNA:   3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5'
498 3' -63.6 AC_000013.1 + 39735 0.66 0.282057
Target:  5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3'
miRNA:   3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5'
498 3' -63.6 AC_000013.1 + 39060 0.66 0.282057
Target:  5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3'
miRNA:   3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5'
498 3' -63.6 AC_000013.1 + 38925 0.66 0.282057
Target:  5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3'
miRNA:   3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5'
498 3' -63.6 AC_000013.1 + 38791 0.66 0.282057
Target:  5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3'
miRNA:   3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5'
498 3' -63.6 AC_000013.1 + 39870 0.66 0.282057
Target:  5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3'
miRNA:   3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5'
498 3' -63.6 AC_000013.1 + 40004 0.66 0.282057
Target:  5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3'
miRNA:   3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5'
498 3' -63.6 AC_000013.1 + 40139 0.66 0.282057
Target:  5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3'
miRNA:   3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5'
498 3' -63.6 AC_000013.1 + 40274 0.66 0.282057
Target:  5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3'
miRNA:   3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5'
498 3' -63.6 AC_000013.1 + 40409 0.66 0.282057
Target:  5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3'
miRNA:   3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5'
498 3' -63.6 AC_000013.1 + 39600 0.66 0.282057
Target:  5'- aCCCGgCgCCCagcacgGGCGCCCCCUg--- -3'
miRNA:   3'- -GGGUgGgGGGaa----CCGUGGGGGGacau -5'
498 3' -63.6 AC_000013.1 + 33840 0.66 0.24317
Target:  5'- aUCCGCagCCCCUgguaagGGCuACCaCCuCCUGUAg -3'
miRNA:   3'- -GGGUGg-GGGGAa-----CCG-UGG-GG-GGACAU- -5'
498 3' -63.6 AC_000013.1 + 37982 0.67 0.219799
Target:  5'- -gCGgUCCCCUagcuucaaUGGCGCCCCCUcGUGg -3'
miRNA:   3'- ggGUgGGGGGA--------ACCGUGGGGGGaCAU- -5'
498 3' -63.6 AC_000013.1 + 9202 0.7 0.144713
Target:  5'- cCCCAUgCCCCacGGCAUgCCCUUGg- -3'
miRNA:   3'- -GGGUGgGGGGaaCCGUGgGGGGACau -5'
498 3' -63.6 AC_000013.1 + 37762 0.89 0.004334
Target:  5'- aCCACCCCCUaUGGaCACCCCCCUGUAc -3'
miRNA:   3'- gGGUGGGGGGaACC-GUGGGGGGACAU- -5'
498 3' -63.6 AC_000013.1 + 37729 0.89 0.004334
Target:  5'- aCCACCCCCUaUGGaCACCCCCCUGUAc -3'
miRNA:   3'- gGGUGGGGGGaACC-GUGGGGGGACAU- -5'
498 3' -63.6 AC_000013.1 + 37696 0.89 0.004334
Target:  5'- aCCACCCCCUaUGGaCACCCCCCUGUAc -3'
miRNA:   3'- gGGUGGGGGGaACC-GUGGGGGGACAU- -5'
498 3' -63.6 AC_000013.1 + 37663 0.89 0.004334
Target:  5'- aCCACCCCCUaUGGaCACCCCCCUGUAc -3'
miRNA:   3'- gGGUGGGGGGaACC-GUGGGGGGACAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.