miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
499 5' -55.6 AC_000013.1 + 16458 0.67 0.576863
Target:  5'- aGCGuugaGGAGC-CAU-CGC-AGGGGGCa -3'
miRNA:   3'- -CGUua--CCUCGaGUAgGUGcUCCCCCG- -5'
499 5' -55.6 AC_000013.1 + 37900 0.67 0.554919
Target:  5'- --cAUGGAGCgggagaCACuAGGGGGCa -3'
miRNA:   3'- cguUACCUCGaguag-GUGcUCCCCCG- -5'
499 5' -55.6 AC_000013.1 + 38926 0.7 0.420735
Target:  5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3'
miRNA:   3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5'
499 5' -55.6 AC_000013.1 + 39061 0.7 0.420735
Target:  5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3'
miRNA:   3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5'
499 5' -55.6 AC_000013.1 + 39195 0.7 0.420735
Target:  5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3'
miRNA:   3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5'
499 5' -55.6 AC_000013.1 + 39330 0.7 0.420735
Target:  5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3'
miRNA:   3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5'
499 5' -55.6 AC_000013.1 + 39465 0.7 0.420735
Target:  5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3'
miRNA:   3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5'
499 5' -55.6 AC_000013.1 + 39600 0.7 0.420735
Target:  5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3'
miRNA:   3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5'
499 5' -55.6 AC_000013.1 + 39735 0.7 0.420735
Target:  5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3'
miRNA:   3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5'
499 5' -55.6 AC_000013.1 + 39870 0.7 0.420735
Target:  5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3'
miRNA:   3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5'
499 5' -55.6 AC_000013.1 + 40005 0.7 0.420735
Target:  5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3'
miRNA:   3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5'
499 5' -55.6 AC_000013.1 + 40139 0.7 0.420735
Target:  5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3'
miRNA:   3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5'
499 5' -55.6 AC_000013.1 + 40274 0.7 0.420735
Target:  5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3'
miRNA:   3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5'
499 5' -55.6 AC_000013.1 + 40409 0.7 0.420735
Target:  5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3'
miRNA:   3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5'
499 5' -55.6 AC_000013.1 + 40544 0.7 0.420735
Target:  5'- uGCAGUGGcGGCccUCggCCGCcAGGGGGa -3'
miRNA:   3'- -CGUUACC-UCG--AGuaGGUGcUCCCCCg -5'
499 5' -55.6 AC_000013.1 + 8312 0.71 0.357038
Target:  5'- cGUAAUGGGcGUggUCAUCCuCGgcuauauaAGGGGGCg -3'
miRNA:   3'- -CGUUACCU-CG--AGUAGGuGC--------UCCCCCG- -5'
499 5' -55.6 AC_000013.1 + 19205 0.72 0.308067
Target:  5'- ----cGGAGaCUCuagCCuGCGAGGGGGUg -3'
miRNA:   3'- cguuaCCUC-GAGua-GG-UGCUCCCCCG- -5'
499 5' -55.6 AC_000013.1 + 38791 0.75 0.202929
Target:  5'- uGCAGUGGcGGC-CAacggCCGCcAGGGGGCg -3'
miRNA:   3'- -CGUUACC-UCGaGUa---GGUGcUCCCCCG- -5'
499 5' -55.6 AC_000013.1 + 37890 1.15 0.000281
Target:  5'- cGCAAUGGAGCUCAUCCACGAGGGGGCg -3'
miRNA:   3'- -CGUUACCUCGAGUAGGUGCUCCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.