Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5102 | 3' | -53.5 | NC_001798.1 | + | 86145 | 0.7 | 0.826831 |
Target: 5'- uGGGaAGcgCACcgcggGGCGCGCAUGCGCg -3' miRNA: 3'- -CCUcUCaaGUGag---CCGUGCGUACGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 92299 | 0.66 | 0.965488 |
Target: 5'- uGGAGcugcugUCGCuacugUCGGCGCGCAgcgGCGa -3' miRNA: 3'- -CCUCuca---AGUG-----AGCCGUGCGUa--CGUg -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 109197 | 0.67 | 0.946142 |
Target: 5'- gGGGGAGgacccggGCUcCGGCACGgAcGCGCg -3' miRNA: 3'- -CCUCUCaag----UGA-GCCGUGCgUaCGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 126727 | 0.69 | 0.874911 |
Target: 5'- gGGGGAGUgCGCUCuuCGCGCGgccGCACc -3' miRNA: 3'- -CCUCUCAaGUGAGccGUGCGUa--CGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 127511 | 0.7 | 0.849384 |
Target: 5'- cGGAGGGcauccggcgccaccUUCGCaaucccaagauUCGGCGCGCGUuCACg -3' miRNA: 3'- -CCUCUC--------------AAGUG-----------AGCCGUGCGUAcGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 129277 | 0.71 | 0.772164 |
Target: 5'- uGGuGAcGUUC-CUCGGCAgGCAccGCGCg -3' miRNA: 3'- -CCuCU-CAAGuGAGCCGUgCGUa-CGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 143081 | 0.66 | 0.954584 |
Target: 5'- uGGAGGcucuugUUGCUgcgUGGUACGCAUGUGCg -3' miRNA: 3'- -CCUCUca----AGUGA---GCCGUGCGUACGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 149247 | 0.69 | 0.874911 |
Target: 5'- cGGGGGcgUCGC-CGGCcgGCGCggGCGCg -3' miRNA: 3'- cCUCUCa-AGUGaGCCG--UGCGuaCGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 149418 | 0.66 | 0.965488 |
Target: 5'- cGGGGGGccUCACgcaguuGCGCGCGUGCuCg -3' miRNA: 3'- -CCUCUCa-AGUGagc---CGUGCGUACGuG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 153767 | 0.7 | 0.826831 |
Target: 5'- cGGaAGGGggCGCUgCGGCccGCGCuccuUGCGCg -3' miRNA: 3'- -CC-UCUCaaGUGA-GCCG--UGCGu---ACGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 154040 | 0.69 | 0.882172 |
Target: 5'- uGGGAGcgCGC-CGGgGCGCG-GCACg -3' miRNA: 3'- cCUCUCaaGUGaGCCgUGCGUaCGUG- -5' |
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5102 | 3' | -53.5 | NC_001798.1 | + | 154203 | 1.13 | 0.002803 |
Target: 5'- gGGAGAGUUCACUCGGCACGCAUGCACg -3' miRNA: 3'- -CCUCUCAAGUGAGCCGUGCGUACGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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