miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5102 3' -53.5 NC_001798.1 + 32833 0.67 0.936728
Target:  5'- gGGGGAGcuaaCACUCGGCuuGC-UGCcCg -3'
miRNA:   3'- -CCUCUCaa--GUGAGCCGugCGuACGuG- -5'
5102 3' -53.5 NC_001798.1 + 27161 0.67 0.940612
Target:  5'- gGGAGGGgcugcugcgaGCUCGGgGcCGCggGCGCg -3'
miRNA:   3'- -CCUCUCaag-------UGAGCCgU-GCGuaCGUG- -5'
5102 3' -53.5 NC_001798.1 + 109197 0.67 0.946142
Target:  5'- gGGGGAGgacccggGCUcCGGCACGgAcGCGCg -3'
miRNA:   3'- -CCUCUCaag----UGA-GCCGUGCgUaCGUG- -5'
5102 3' -53.5 NC_001798.1 + 43589 0.67 0.950483
Target:  5'- cGGAu-GUUCAgCUgGGCGCGCAcGUGCc -3'
miRNA:   3'- -CCUcuCAAGU-GAgCCGUGCGUaCGUG- -5'
5102 3' -53.5 NC_001798.1 + 143081 0.66 0.954584
Target:  5'- uGGAGGcucuugUUGCUgcgUGGUACGCAUGUGCg -3'
miRNA:   3'- -CCUCUca----AGUGA---GCCGUGCGUACGUG- -5'
5102 3' -53.5 NC_001798.1 + 68432 0.66 0.954584
Target:  5'- uGGGGGUUCgugACUUGGCuCGCcgaGCACc -3'
miRNA:   3'- cCUCUCAAG---UGAGCCGuGCGua-CGUG- -5'
5102 3' -53.5 NC_001798.1 + 60788 0.66 0.962082
Target:  5'- aGGAucccGUUCAgCUCGGCGCccuGCA-GCACu -3'
miRNA:   3'- -CCUcu--CAAGU-GAGCCGUG---CGUaCGUG- -5'
5102 3' -53.5 NC_001798.1 + 34091 0.66 0.965488
Target:  5'- gGGGGGGUg-AC-CGGCGCGUggGgGCg -3'
miRNA:   3'- -CCUCUCAagUGaGCCGUGCGuaCgUG- -5'
5102 3' -53.5 NC_001798.1 + 149418 0.66 0.965488
Target:  5'- cGGGGGGccUCACgcaguuGCGCGCGUGCuCg -3'
miRNA:   3'- -CCUCUCa-AGUGagc---CGUGCGUACGuG- -5'
5102 3' -53.5 NC_001798.1 + 92299 0.66 0.965488
Target:  5'- uGGAGcugcugUCGCuacugUCGGCGCGCAgcgGCGa -3'
miRNA:   3'- -CCUCuca---AGUG-----AGCCGUGCGUa--CGUg -5'
5102 3' -53.5 NC_001798.1 + 27795 0.66 0.968673
Target:  5'- gGGuGAGUUCGCUaGGCAaGCAcGgACu -3'
miRNA:   3'- -CCuCUCAAGUGAgCCGUgCGUaCgUG- -5'
5102 3' -53.5 NC_001798.1 + 76257 0.66 0.968673
Target:  5'- cGGGAcgUCGCUCaGCGCGCc-GCGCu -3'
miRNA:   3'- cCUCUcaAGUGAGcCGUGCGuaCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.