miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5103 3' -58.5 NC_001798.1 + 151343 1.1 0.001458
Target:  5'- aCCCGCUGGCGGUCACGCCCACUAUCAg -3'
miRNA:   3'- -GGGCGACCGCCAGUGCGGGUGAUAGU- -5'
5103 3' -58.5 NC_001798.1 + 72809 0.73 0.422042
Target:  5'- gCgCGCUGGCGG-CGCcucucgGCCgGCUAUCAg -3'
miRNA:   3'- -GgGCGACCGCCaGUG------CGGgUGAUAGU- -5'
5103 3' -58.5 NC_001798.1 + 25448 0.73 0.413478
Target:  5'- cCCCGCcccccGGCGG-CGCGCCCGCcgccuUCGg -3'
miRNA:   3'- -GGGCGa----CCGCCaGUGCGGGUGau---AGU- -5'
5103 3' -58.5 NC_001798.1 + 44503 0.72 0.494151
Target:  5'- uUCgGgUGGUGGgUCACGCCCACUuccGUCc -3'
miRNA:   3'- -GGgCgACCGCC-AGUGCGGGUGA---UAGu -5'
5103 3' -58.5 NC_001798.1 + 138146 0.71 0.541957
Target:  5'- gCUGCU-GCGGUCGCGCCCcCggGUCc -3'
miRNA:   3'- gGGCGAcCGCCAGUGCGGGuGa-UAGu -5'
5103 3' -58.5 NC_001798.1 + 138400 0.7 0.5912
Target:  5'- aCCCGCgcGGCGccagccacccCGCGCUCGCUGUCGc -3'
miRNA:   3'- -GGGCGa-CCGCca--------GUGCGGGUGAUAGU- -5'
5103 3' -58.5 NC_001798.1 + 1246 0.7 0.611139
Target:  5'- aUCUGCgggGGCGGgccCGCGUCCGCgucGUCGc -3'
miRNA:   3'- -GGGCGa--CCGCCa--GUGCGGGUGa--UAGU- -5'
5103 3' -58.5 NC_001798.1 + 25481 0.7 0.581269
Target:  5'- gCCCGCUGcGCGccUCGgGCCCGCUGc-- -3'
miRNA:   3'- -GGGCGAC-CGCc-AGUgCGGGUGAUagu -5'
5103 3' -58.5 NC_001798.1 + 77801 0.7 0.5912
Target:  5'- -gCGCUGGCGGgCACGCaCgGCUA-CAa -3'
miRNA:   3'- ggGCGACCGCCaGUGCG-GgUGAUaGU- -5'
5103 3' -58.5 NC_001798.1 + 94387 0.69 0.661125
Target:  5'- -aCGCUGaCGGUCGCGCUCucggagggggcgGCUAUCu -3'
miRNA:   3'- ggGCGACcGCCAGUGCGGG------------UGAUAGu -5'
5103 3' -58.5 NC_001798.1 + 125068 0.69 0.641143
Target:  5'- gCCCGUgGGUGGcCACGUCCACc---- -3'
miRNA:   3'- -GGGCGaCCGCCaGUGCGGGUGauagu -5'
5103 3' -58.5 NC_001798.1 + 7793 0.69 0.661125
Target:  5'- cCCCGCUGGCGGga--GCCagg-GUCGg -3'
miRNA:   3'- -GGGCGACCGCCagugCGGgugaUAGU- -5'
5103 3' -58.5 NC_001798.1 + 109325 0.69 0.661125
Target:  5'- aCCUGCUgGGCuuUUugGCCCACUcgCGc -3'
miRNA:   3'- -GGGCGA-CCGccAGugCGGGUGAuaGU- -5'
5103 3' -58.5 NC_001798.1 + 96162 0.68 0.739499
Target:  5'- aCUCGCcaUGGCGGcCGCGCCCcCg---- -3'
miRNA:   3'- -GGGCG--ACCGCCaGUGCGGGuGauagu -5'
5103 3' -58.5 NC_001798.1 + 153397 0.68 0.739499
Target:  5'- aCCGgUcGCGGUCG-GCCCGCUcgCGc -3'
miRNA:   3'- gGGCgAcCGCCAGUgCGGGUGAuaGU- -5'
5103 3' -58.5 NC_001798.1 + 43118 0.68 0.729926
Target:  5'- gUCGCUuccGGCGGgcgCGCGuCCCGC-GUCAc -3'
miRNA:   3'- gGGCGA---CCGCCa--GUGC-GGGUGaUAGU- -5'
5103 3' -58.5 NC_001798.1 + 127638 0.68 0.729926
Target:  5'- gCUGCUGGUgcuGGUCuccCGCCU-CUGUCAc -3'
miRNA:   3'- gGGCGACCG---CCAGu--GCGGGuGAUAGU- -5'
5103 3' -58.5 NC_001798.1 + 133032 0.68 0.729926
Target:  5'- gCCgGCcgaGGUGGUCGCGCUCAUgcgCGg -3'
miRNA:   3'- -GGgCGa--CCGCCAGUGCGGGUGauaGU- -5'
5103 3' -58.5 NC_001798.1 + 54664 0.68 0.690908
Target:  5'- gCCgGCagccGCGG-CGCGCCCGCUcgCGg -3'
miRNA:   3'- -GGgCGac--CGCCaGUGCGGGUGAuaGU- -5'
5103 3' -58.5 NC_001798.1 + 102381 0.68 0.729926
Target:  5'- aCCCGcCUGGCGGUCGgCGgcgauggccCCCACc---- -3'
miRNA:   3'- -GGGC-GACCGCCAGU-GC---------GGGUGauagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.