Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5103 | 3' | -58.5 | NC_001798.1 | + | 151343 | 1.1 | 0.001458 |
Target: 5'- aCCCGCUGGCGGUCACGCCCACUAUCAg -3' miRNA: 3'- -GGGCGACCGCCAGUGCGGGUGAUAGU- -5' |
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5103 | 3' | -58.5 | NC_001798.1 | + | 25448 | 0.73 | 0.413478 |
Target: 5'- cCCCGCcccccGGCGG-CGCGCCCGCcgccuUCGg -3' miRNA: 3'- -GGGCGa----CCGCCaGUGCGGGUGau---AGU- -5' |
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5103 | 3' | -58.5 | NC_001798.1 | + | 72809 | 0.73 | 0.422042 |
Target: 5'- gCgCGCUGGCGG-CGCcucucgGCCgGCUAUCAg -3' miRNA: 3'- -GgGCGACCGCCaGUG------CGGgUGAUAGU- -5' |
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5103 | 3' | -58.5 | NC_001798.1 | + | 44503 | 0.72 | 0.494151 |
Target: 5'- uUCgGgUGGUGGgUCACGCCCACUuccGUCc -3' miRNA: 3'- -GGgCgACCGCC-AGUGCGGGUGA---UAGu -5' |
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5103 | 3' | -58.5 | NC_001798.1 | + | 138146 | 0.71 | 0.541957 |
Target: 5'- gCUGCU-GCGGUCGCGCCCcCggGUCc -3' miRNA: 3'- gGGCGAcCGCCAGUGCGGGuGa-UAGu -5' |
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5103 | 3' | -58.5 | NC_001798.1 | + | 25481 | 0.7 | 0.581269 |
Target: 5'- gCCCGCUGcGCGccUCGgGCCCGCUGc-- -3' miRNA: 3'- -GGGCGAC-CGCc-AGUgCGGGUGAUagu -5' |
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5103 | 3' | -58.5 | NC_001798.1 | + | 1246 | 0.7 | 0.611139 |
Target: 5'- aUCUGCgggGGCGGgccCGCGUCCGCgucGUCGc -3' miRNA: 3'- -GGGCGa--CCGCCa--GUGCGGGUGa--UAGU- -5' |
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5103 | 3' | -58.5 | NC_001798.1 | + | 138400 | 0.7 | 0.5912 |
Target: 5'- aCCCGCgcGGCGccagccacccCGCGCUCGCUGUCGc -3' miRNA: 3'- -GGGCGa-CCGCca--------GUGCGGGUGAUAGU- -5' |
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5103 | 3' | -58.5 | NC_001798.1 | + | 77801 | 0.7 | 0.5912 |
Target: 5'- -gCGCUGGCGGgCACGCaCgGCUA-CAa -3' miRNA: 3'- ggGCGACCGCCaGUGCG-GgUGAUaGU- -5' |
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5103 | 3' | -58.5 | NC_001798.1 | + | 125068 | 0.69 | 0.641143 |
Target: 5'- gCCCGUgGGUGGcCACGUCCACc---- -3' miRNA: 3'- -GGGCGaCCGCCaGUGCGGGUGauagu -5' |
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5103 | 3' | -58.5 | NC_001798.1 | + | 7793 | 0.69 | 0.661125 |
Target: 5'- cCCCGCUGGCGGga--GCCagg-GUCGg -3' miRNA: 3'- -GGGCGACCGCCagugCGGgugaUAGU- -5' |
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5103 | 3' | -58.5 | NC_001798.1 | + | 109325 | 0.69 | 0.661125 |
Target: 5'- aCCUGCUgGGCuuUUugGCCCACUcgCGc -3' miRNA: 3'- -GGGCGA-CCGccAGugCGGGUGAuaGU- -5' |
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5103 | 3' | -58.5 | NC_001798.1 | + | 94387 | 0.69 | 0.661125 |
Target: 5'- -aCGCUGaCGGUCGCGCUCucggagggggcgGCUAUCu -3' miRNA: 3'- ggGCGACcGCCAGUGCGGG------------UGAUAGu -5' |
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5103 | 3' | -58.5 | NC_001798.1 | + | 96162 | 0.68 | 0.739499 |
Target: 5'- aCUCGCcaUGGCGGcCGCGCCCcCg---- -3' miRNA: 3'- -GGGCG--ACCGCCaGUGCGGGuGauagu -5' |
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5103 | 3' | -58.5 | NC_001798.1 | + | 54664 | 0.68 | 0.690908 |
Target: 5'- gCCgGCagccGCGG-CGCGCCCGCUcgCGg -3' miRNA: 3'- -GGgCGac--CGCCaGUGCGGGUGAuaGU- -5' |
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5103 | 3' | -58.5 | NC_001798.1 | + | 153397 | 0.68 | 0.739499 |
Target: 5'- aCCGgUcGCGGUCG-GCCCGCUcgCGc -3' miRNA: 3'- gGGCgAcCGCCAGUgCGGGUGAuaGU- -5' |
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5103 | 3' | -58.5 | NC_001798.1 | + | 102381 | 0.68 | 0.729926 |
Target: 5'- aCCCGcCUGGCGGUCGgCGgcgauggccCCCACc---- -3' miRNA: 3'- -GGGC-GACCGCCAGU-GC---------GGGUGauagu -5' |
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5103 | 3' | -58.5 | NC_001798.1 | + | 127638 | 0.68 | 0.729926 |
Target: 5'- gCUGCUGGUgcuGGUCuccCGCCU-CUGUCAc -3' miRNA: 3'- gGGCGACCG---CCAGu--GCGGGuGAUAGU- -5' |
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5103 | 3' | -58.5 | NC_001798.1 | + | 43118 | 0.68 | 0.729926 |
Target: 5'- gUCGCUuccGGCGGgcgCGCGuCCCGC-GUCAc -3' miRNA: 3'- gGGCGA---CCGCCa--GUGC-GGGUGaUAGU- -5' |
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5103 | 3' | -58.5 | NC_001798.1 | + | 59679 | 0.68 | 0.720271 |
Target: 5'- gCUCGCgugggGGCGGcgggCACGCCCGuCU-UCGg -3' miRNA: 3'- -GGGCGa----CCGCCa---GUGCGGGU-GAuAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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