miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5103 3' -58.5 NC_001798.1 + 1246 0.7 0.611139
Target:  5'- aUCUGCgggGGCGGgccCGCGUCCGCgucGUCGc -3'
miRNA:   3'- -GGGCGa--CCGCCa--GUGCGGGUGa--UAGU- -5'
5103 3' -58.5 NC_001798.1 + 2571 0.66 0.80353
Target:  5'- gCCGCggGGCGGgggGCGUCCGCg--CGg -3'
miRNA:   3'- gGGCGa-CCGCCag-UGCGGGUGauaGU- -5'
5103 3' -58.5 NC_001798.1 + 7793 0.69 0.661125
Target:  5'- cCCCGCUGGCGGga--GCCagg-GUCGg -3'
miRNA:   3'- -GGGCGACCGCCagugCGGgugaUAGU- -5'
5103 3' -58.5 NC_001798.1 + 8719 0.68 0.710544
Target:  5'- aCUGCUGGCGGccCAUGCgCACgaggaaGUCGu -3'
miRNA:   3'- gGGCGACCGCCa-GUGCGgGUGa-----UAGU- -5'
5103 3' -58.5 NC_001798.1 + 10333 0.67 0.793877
Target:  5'- -aCGCUgaccGGCGugcguucGUCACGCCCGC-GUCGu -3'
miRNA:   3'- ggGCGA----CCGC-------CAGUGCGGGUGaUAGU- -5'
5103 3' -58.5 NC_001798.1 + 15377 0.67 0.767649
Target:  5'- gCCGUgggcgcGGCGGagGCGCCCACc---- -3'
miRNA:   3'- gGGCGa-----CCGCCagUGCGGGUGauagu -5'
5103 3' -58.5 NC_001798.1 + 18829 0.66 0.820613
Target:  5'- cCCCGgUGGUGGUU-CGCCCGg----- -3'
miRNA:   3'- -GGGCgACCGCCAGuGCGGGUgauagu -5'
5103 3' -58.5 NC_001798.1 + 25253 0.67 0.75837
Target:  5'- aCCCGCagGGCGG-CugGCgCCGCc---- -3'
miRNA:   3'- -GGGCGa-CCGCCaGugCG-GGUGauagu -5'
5103 3' -58.5 NC_001798.1 + 25448 0.73 0.413478
Target:  5'- cCCCGCcccccGGCGG-CGCGCCCGCcgccuUCGg -3'
miRNA:   3'- -GGGCGa----CCGCCaGUGCGGGUGau---AGU- -5'
5103 3' -58.5 NC_001798.1 + 25481 0.7 0.581269
Target:  5'- gCCCGCUGcGCGccUCGgGCCCGCUGc-- -3'
miRNA:   3'- -GGGCGAC-CGCc-AGUgCGGGUGAUagu -5'
5103 3' -58.5 NC_001798.1 + 30820 0.67 0.767649
Target:  5'- aCCCGC-GGaCGGcccCGCGCUCcCUGUCGc -3'
miRNA:   3'- -GGGCGaCC-GCCa--GUGCGGGuGAUAGU- -5'
5103 3' -58.5 NC_001798.1 + 35449 0.67 0.768571
Target:  5'- gCCGCUGGCGccgcggcccgucugCugGCCCGCggcccGUCu -3'
miRNA:   3'- gGGCGACCGCca------------GugCGGGUGa----UAGu -5'
5103 3' -58.5 NC_001798.1 + 36139 0.66 0.837042
Target:  5'- uCCCGCcGGUGGggCGCGgCgGCgGUCGg -3'
miRNA:   3'- -GGGCGaCCGCCa-GUGCgGgUGaUAGU- -5'
5103 3' -58.5 NC_001798.1 + 43118 0.68 0.729926
Target:  5'- gUCGCUuccGGCGGgcgCGCGuCCCGC-GUCAc -3'
miRNA:   3'- gGGCGA---CCGCCa--GUGC-GGGUGaUAGU- -5'
5103 3' -58.5 NC_001798.1 + 44503 0.72 0.494151
Target:  5'- uUCgGgUGGUGGgUCACGCCCACUuccGUCc -3'
miRNA:   3'- -GGgCgACCGCC-AGUGCGGGUGA---UAGu -5'
5103 3' -58.5 NC_001798.1 + 48167 0.66 0.81215
Target:  5'- -gCGcCUGGCGGccacgCACGCCCGgCUggCGg -3'
miRNA:   3'- ggGC-GACCGCCa----GUGCGGGU-GAuaGU- -5'
5103 3' -58.5 NC_001798.1 + 50091 0.67 0.785854
Target:  5'- uCCUGCggaggccgGGCuGGUgGCGCCgCGCaUGUCGu -3'
miRNA:   3'- -GGGCGa-------CCG-CCAgUGCGG-GUG-AUAGU- -5'
5103 3' -58.5 NC_001798.1 + 54664 0.68 0.690908
Target:  5'- gCCgGCagccGCGG-CGCGCCCGCUcgCGg -3'
miRNA:   3'- -GGgCGac--CGCCaGUGCGGGUGAuaGU- -5'
5103 3' -58.5 NC_001798.1 + 58415 0.67 0.776813
Target:  5'- -gCGCaGGCGGccagcgcgagCGCGCCCGCaaagGUCAc -3'
miRNA:   3'- ggGCGaCCGCCa---------GUGCGGGUGa---UAGU- -5'
5103 3' -58.5 NC_001798.1 + 59679 0.68 0.720271
Target:  5'- gCUCGCgugggGGCGGcgggCACGCCCGuCU-UCGg -3'
miRNA:   3'- -GGGCGa----CCGCCa---GUGCGGGU-GAuAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.