miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5103 3' -58.5 NC_001798.1 + 60161 0.66 0.837042
Target:  5'- -gCGUUGGCGGcCGCuugGCCCGCcuucuUCAg -3'
miRNA:   3'- ggGCGACCGCCaGUG---CGGGUGau---AGU- -5'
5103 3' -58.5 NC_001798.1 + 61571 0.67 0.785854
Target:  5'- aCCGCgaGGCaaUCACGCUaCACUGUCu -3'
miRNA:   3'- gGGCGa-CCGccAGUGCGG-GUGAUAGu -5'
5103 3' -58.5 NC_001798.1 + 62277 0.66 0.81215
Target:  5'- gCCCGCcgGGCGGcccggcgggagCGCGCCaACUcgCGc -3'
miRNA:   3'- -GGGCGa-CCGCCa----------GUGCGGgUGAuaGU- -5'
5103 3' -58.5 NC_001798.1 + 70445 0.66 0.81215
Target:  5'- aCCGCaUGGCGGUgGCGCUCc------ -3'
miRNA:   3'- gGGCG-ACCGCCAgUGCGGGugauagu -5'
5103 3' -58.5 NC_001798.1 + 70628 0.66 0.81215
Target:  5'- aCCGCUGGCGGaccgUCAC-CCagaGCUGc-- -3'
miRNA:   3'- gGGCGACCGCC----AGUGcGGg--UGAUagu -5'
5103 3' -58.5 NC_001798.1 + 72809 0.73 0.422042
Target:  5'- gCgCGCUGGCGG-CGCcucucgGCCgGCUAUCAg -3'
miRNA:   3'- -GgGCGACCGCCaGUG------CGGgUGAUAGU- -5'
5103 3' -58.5 NC_001798.1 + 75304 0.66 0.828913
Target:  5'- gCCCGCgaGGUGGccgcguguUCGCaGCUCACcAUCAa -3'
miRNA:   3'- -GGGCGa-CCGCC--------AGUG-CGGGUGaUAGU- -5'
5103 3' -58.5 NC_001798.1 + 77801 0.7 0.5912
Target:  5'- -gCGCUGGCGGgCACGCaCgGCUA-CAa -3'
miRNA:   3'- ggGCGACCGCCaGUGCG-GgUGAUaGU- -5'
5103 3' -58.5 NC_001798.1 + 86868 0.66 0.81215
Target:  5'- aCCCgGC-GGCGGUCGCGCuuuuCCGCc---- -3'
miRNA:   3'- -GGG-CGaCCGCCAGUGCG----GGUGauagu -5'
5103 3' -58.5 NC_001798.1 + 91983 0.66 0.81215
Target:  5'- aUCCGgUGGCGGgccauUCuCGCCCACcccAUCc -3'
miRNA:   3'- -GGGCgACCGCC-----AGuGCGGGUGa--UAGu -5'
5103 3' -58.5 NC_001798.1 + 94387 0.69 0.661125
Target:  5'- -aCGCUGaCGGUCGCGCUCucggagggggcgGCUAUCu -3'
miRNA:   3'- ggGCGACcGCCAGUGCGGG------------UGAUAGu -5'
5103 3' -58.5 NC_001798.1 + 95114 0.66 0.81215
Target:  5'- gCCCGUgaUGGCcG-CGCGCCCGaugGUCGu -3'
miRNA:   3'- -GGGCG--ACCGcCaGUGCGGGUga-UAGU- -5'
5103 3' -58.5 NC_001798.1 + 95218 0.67 0.776813
Target:  5'- gCCUGCUgGGCGG-CAaaaacgcgUGCCCGCUGc-- -3'
miRNA:   3'- -GGGCGA-CCGCCaGU--------GCGGGUGAUagu -5'
5103 3' -58.5 NC_001798.1 + 96162 0.68 0.739499
Target:  5'- aCUCGCcaUGGCGGcCGCGCCCcCg---- -3'
miRNA:   3'- -GGGCG--ACCGCCaGUGCGGGuGauagu -5'
5103 3' -58.5 NC_001798.1 + 96401 0.66 0.820613
Target:  5'- cCCCGCUGuCGGUCAC-CCUGgaGUUg -3'
miRNA:   3'- -GGGCGACcGCCAGUGcGGGUgaUAGu -5'
5103 3' -58.5 NC_001798.1 + 100572 0.66 0.828913
Target:  5'- gCCC-CUGGaGGUCuacACGCgCCACgagAUCAa -3'
miRNA:   3'- -GGGcGACCgCCAG---UGCG-GGUGa--UAGU- -5'
5103 3' -58.5 NC_001798.1 + 102381 0.68 0.729926
Target:  5'- aCCCGcCUGGCGGUCGgCGgcgauggccCCCACc---- -3'
miRNA:   3'- -GGGC-GACCGCCAGU-GC---------GGGUGauagu -5'
5103 3' -58.5 NC_001798.1 + 102537 0.66 0.81215
Target:  5'- cCCCGC-GGcCGG-CAgGCCgCACgcgGUCAg -3'
miRNA:   3'- -GGGCGaCC-GCCaGUgCGG-GUGa--UAGU- -5'
5103 3' -58.5 NC_001798.1 + 104102 0.67 0.75837
Target:  5'- gCCGcCUGGCGG--GCGCCCGacgacaUAUCc -3'
miRNA:   3'- gGGC-GACCGCCagUGCGGGUg-----AUAGu -5'
5103 3' -58.5 NC_001798.1 + 109325 0.69 0.661125
Target:  5'- aCCUGCUgGGCuuUUugGCCCACUcgCGc -3'
miRNA:   3'- -GGGCGA-CCGccAGugCGGGUGAuaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.