miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5103 3' -58.5 NC_001798.1 + 77801 0.7 0.5912
Target:  5'- -gCGCUGGCGGgCACGCaCgGCUA-CAa -3'
miRNA:   3'- ggGCGACCGCCaGUGCG-GgUGAUaGU- -5'
5103 3' -58.5 NC_001798.1 + 25481 0.7 0.581269
Target:  5'- gCCCGCUGcGCGccUCGgGCCCGCUGc-- -3'
miRNA:   3'- -GGGCGAC-CGCc-AGUgCGGGUGAUagu -5'
5103 3' -58.5 NC_001798.1 + 138146 0.71 0.541957
Target:  5'- gCUGCU-GCGGUCGCGCCCcCggGUCc -3'
miRNA:   3'- gGGCGAcCGCCAGUGCGGGuGa-UAGu -5'
5103 3' -58.5 NC_001798.1 + 44503 0.72 0.494151
Target:  5'- uUCgGgUGGUGGgUCACGCCCACUuccGUCc -3'
miRNA:   3'- -GGgCgACCGCC-AGUGCGGGUGA---UAGu -5'
5103 3' -58.5 NC_001798.1 + 72809 0.73 0.422042
Target:  5'- gCgCGCUGGCGG-CGCcucucgGCCgGCUAUCAg -3'
miRNA:   3'- -GgGCGACCGCCaGUG------CGGgUGAUAGU- -5'
5103 3' -58.5 NC_001798.1 + 25448 0.73 0.413478
Target:  5'- cCCCGCcccccGGCGG-CGCGCCCGCcgccuUCGg -3'
miRNA:   3'- -GGGCGa----CCGCCaGUGCGGGUGau---AGU- -5'
5103 3' -58.5 NC_001798.1 + 151343 1.1 0.001458
Target:  5'- aCCCGCUGGCGGUCACGCCCACUAUCAg -3'
miRNA:   3'- -GGGCGACCGCCAGUGCGGGUGAUAGU- -5'
5103 3' -58.5 NC_001798.1 + 91983 0.66 0.81215
Target:  5'- aUCCGgUGGCGGgccauUCuCGCCCACcccAUCc -3'
miRNA:   3'- -GGGCgACCGCC-----AGuGCGGGUGa--UAGu -5'
5103 3' -58.5 NC_001798.1 + 60161 0.66 0.837042
Target:  5'- -gCGUUGGCGGcCGCuugGCCCGCcuucuUCAg -3'
miRNA:   3'- ggGCGACCGCCaGUG---CGGGUGau---AGU- -5'
5103 3' -58.5 NC_001798.1 + 75304 0.66 0.828913
Target:  5'- gCCCGCgaGGUGGccgcguguUCGCaGCUCACcAUCAa -3'
miRNA:   3'- -GGGCGa-CCGCC--------AGUG-CGGGUGaUAGU- -5'
5103 3' -58.5 NC_001798.1 + 100572 0.66 0.828913
Target:  5'- gCCC-CUGGaGGUCuacACGCgCCACgagAUCAa -3'
miRNA:   3'- -GGGcGACCgCCAG---UGCG-GGUGa--UAGU- -5'
5103 3' -58.5 NC_001798.1 + 96401 0.66 0.820613
Target:  5'- cCCCGCUGuCGGUCAC-CCUGgaGUUg -3'
miRNA:   3'- -GGGCGACcGCCAGUGcGGGUgaUAGu -5'
5103 3' -58.5 NC_001798.1 + 18829 0.66 0.820613
Target:  5'- cCCCGgUGGUGGUU-CGCCCGg----- -3'
miRNA:   3'- -GGGCgACCGCCAGuGCGGGUgauagu -5'
5103 3' -58.5 NC_001798.1 + 109502 0.66 0.820613
Target:  5'- gCCUGgUGGCGcaCGCGCUgGgCUAUCAg -3'
miRNA:   3'- -GGGCgACCGCcaGUGCGGgU-GAUAGU- -5'
5103 3' -58.5 NC_001798.1 + 102537 0.66 0.81215
Target:  5'- cCCCGC-GGcCGG-CAgGCCgCACgcgGUCAg -3'
miRNA:   3'- -GGGCGaCC-GCCaGUgCGG-GUGa--UAGU- -5'
5103 3' -58.5 NC_001798.1 + 86868 0.66 0.81215
Target:  5'- aCCCgGC-GGCGGUCGCGCuuuuCCGCc---- -3'
miRNA:   3'- -GGG-CGaCCGCCAGUGCG----GGUGauagu -5'
5103 3' -58.5 NC_001798.1 + 70628 0.66 0.81215
Target:  5'- aCCGCUGGCGGaccgUCAC-CCagaGCUGc-- -3'
miRNA:   3'- gGGCGACCGCC----AGUGcGGg--UGAUagu -5'
5103 3' -58.5 NC_001798.1 + 70445 0.66 0.81215
Target:  5'- aCCGCaUGGCGGUgGCGCUCc------ -3'
miRNA:   3'- gGGCG-ACCGCCAgUGCGGGugauagu -5'
5103 3' -58.5 NC_001798.1 + 62277 0.66 0.81215
Target:  5'- gCCCGCcgGGCGGcccggcgggagCGCGCCaACUcgCGc -3'
miRNA:   3'- -GGGCGa-CCGCCa----------GUGCGGgUGAuaGU- -5'
5103 3' -58.5 NC_001798.1 + 95114 0.66 0.81215
Target:  5'- gCCCGUgaUGGCcG-CGCGCCCGaugGUCGu -3'
miRNA:   3'- -GGGCG--ACCGcCaGUGCGGGUga-UAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.