miRNA display CGI


Results 41 - 53 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5103 3' -58.5 NC_001798.1 + 91983 0.66 0.81215
Target:  5'- aUCCGgUGGCGGgccauUCuCGCCCACcccAUCc -3'
miRNA:   3'- -GGGCgACCGCC-----AGuGCGGGUGa--UAGu -5'
5103 3' -58.5 NC_001798.1 + 142337 0.67 0.767649
Target:  5'- -gCGCUGGUGGg-ACGCCCAUa---- -3'
miRNA:   3'- ggGCGACCGCCagUGCGGGUGauagu -5'
5103 3' -58.5 NC_001798.1 + 30820 0.67 0.767649
Target:  5'- aCCCGC-GGaCGGcccCGCGCUCcCUGUCGc -3'
miRNA:   3'- -GGGCGaCC-GCCa--GUGCGGGuGAUAGU- -5'
5103 3' -58.5 NC_001798.1 + 35449 0.67 0.768571
Target:  5'- gCCGCUGGCGccgcggcccgucugCugGCCCGCggcccGUCu -3'
miRNA:   3'- gGGCGACCGCca------------GugCGGGUGa----UAGu -5'
5103 3' -58.5 NC_001798.1 + 95218 0.67 0.776813
Target:  5'- gCCUGCUgGGCGG-CAaaaacgcgUGCCCGCUGc-- -3'
miRNA:   3'- -GGGCGA-CCGCCaGU--------GCGGGUGAUagu -5'
5103 3' -58.5 NC_001798.1 + 58415 0.67 0.776813
Target:  5'- -gCGCaGGCGGccagcgcgagCGCGCCCGCaaagGUCAc -3'
miRNA:   3'- ggGCGaCCGCCa---------GUGCGGGUGa---UAGU- -5'
5103 3' -58.5 NC_001798.1 + 113518 0.67 0.776813
Target:  5'- cCCUGgUGGCGG-C-CGCCCAUgagacguUCAg -3'
miRNA:   3'- -GGGCgACCGCCaGuGCGGGUGau-----AGU- -5'
5103 3' -58.5 NC_001798.1 + 50091 0.67 0.785854
Target:  5'- uCCUGCggaggccgGGCuGGUgGCGCCgCGCaUGUCGu -3'
miRNA:   3'- -GGGCGa-------CCG-CCAgUGCGG-GUG-AUAGU- -5'
5103 3' -58.5 NC_001798.1 + 61571 0.67 0.785854
Target:  5'- aCCGCgaGGCaaUCACGCUaCACUGUCu -3'
miRNA:   3'- gGGCGa-CCGccAGUGCGG-GUGAUAGu -5'
5103 3' -58.5 NC_001798.1 + 10333 0.67 0.793877
Target:  5'- -aCGCUgaccGGCGugcguucGUCACGCCCGC-GUCGu -3'
miRNA:   3'- ggGCGA----CCGC-------CAGUGCGGGUGaUAGU- -5'
5103 3' -58.5 NC_001798.1 + 2571 0.66 0.80353
Target:  5'- gCCGCggGGCGGgggGCGUCCGCg--CGg -3'
miRNA:   3'- gGGCGa-CCGCCag-UGCGGGUGauaGU- -5'
5103 3' -58.5 NC_001798.1 + 48167 0.66 0.81215
Target:  5'- -gCGcCUGGCGGccacgCACGCCCGgCUggCGg -3'
miRNA:   3'- ggGC-GACCGCCa----GUGCGGGU-GAuaGU- -5'
5103 3' -58.5 NC_001798.1 + 36139 0.66 0.837042
Target:  5'- uCCCGCcGGUGGggCGCGgCgGCgGUCGg -3'
miRNA:   3'- -GGGCGaCCGCCa-GUGCgGgUGaUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.