miRNA display CGI


Results 41 - 53 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5103 3' -58.5 NC_001798.1 + 86868 0.66 0.81215
Target:  5'- aCCCgGC-GGCGGUCGCGCuuuuCCGCc---- -3'
miRNA:   3'- -GGG-CGaCCGCCAGUGCG----GGUGauagu -5'
5103 3' -58.5 NC_001798.1 + 70628 0.66 0.81215
Target:  5'- aCCGCUGGCGGaccgUCAC-CCagaGCUGc-- -3'
miRNA:   3'- gGGCGACCGCC----AGUGcGGg--UGAUagu -5'
5103 3' -58.5 NC_001798.1 + 70445 0.66 0.81215
Target:  5'- aCCGCaUGGCGGUgGCGCUCc------ -3'
miRNA:   3'- gGGCG-ACCGCCAgUGCGGGugauagu -5'
5103 3' -58.5 NC_001798.1 + 62277 0.66 0.81215
Target:  5'- gCCCGCcgGGCGGcccggcgggagCGCGCCaACUcgCGc -3'
miRNA:   3'- -GGGCGa-CCGCCa----------GUGCGGgUGAuaGU- -5'
5103 3' -58.5 NC_001798.1 + 95114 0.66 0.81215
Target:  5'- gCCCGUgaUGGCcG-CGCGCCCGaugGUCGu -3'
miRNA:   3'- -GGGCG--ACCGcCaGUGCGGGUga-UAGU- -5'
5103 3' -58.5 NC_001798.1 + 48167 0.66 0.81215
Target:  5'- -gCGcCUGGCGGccacgCACGCCCGgCUggCGg -3'
miRNA:   3'- ggGC-GACCGCCa----GUGCGGGU-GAuaGU- -5'
5103 3' -58.5 NC_001798.1 + 109502 0.66 0.820613
Target:  5'- gCCUGgUGGCGcaCGCGCUgGgCUAUCAg -3'
miRNA:   3'- -GGGCgACCGCcaGUGCGGgU-GAUAGU- -5'
5103 3' -58.5 NC_001798.1 + 18829 0.66 0.820613
Target:  5'- cCCCGgUGGUGGUU-CGCCCGg----- -3'
miRNA:   3'- -GGGCgACCGCCAGuGCGGGUgauagu -5'
5103 3' -58.5 NC_001798.1 + 96401 0.66 0.820613
Target:  5'- cCCCGCUGuCGGUCAC-CCUGgaGUUg -3'
miRNA:   3'- -GGGCGACcGCCAGUGcGGGUgaUAGu -5'
5103 3' -58.5 NC_001798.1 + 100572 0.66 0.828913
Target:  5'- gCCC-CUGGaGGUCuacACGCgCCACgagAUCAa -3'
miRNA:   3'- -GGGcGACCgCCAG---UGCG-GGUGa--UAGU- -5'
5103 3' -58.5 NC_001798.1 + 75304 0.66 0.828913
Target:  5'- gCCCGCgaGGUGGccgcguguUCGCaGCUCACcAUCAa -3'
miRNA:   3'- -GGGCGa-CCGCC--------AGUG-CGGGUGaUAGU- -5'
5103 3' -58.5 NC_001798.1 + 36139 0.66 0.837042
Target:  5'- uCCCGCcGGUGGggCGCGgCgGCgGUCGg -3'
miRNA:   3'- -GGGCGaCCGCCa-GUGCgGgUGaUAGU- -5'
5103 3' -58.5 NC_001798.1 + 60161 0.66 0.837042
Target:  5'- -gCGUUGGCGGcCGCuugGCCCGCcuucuUCAg -3'
miRNA:   3'- ggGCGACCGCCaGUG---CGGGUGau---AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.