miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5103 3' -58.5 NC_001798.1 + 153397 0.68 0.739499
Target:  5'- aCCGgUcGCGGUCG-GCCCGCUcgCGc -3'
miRNA:   3'- gGGCgAcCGCCAGUgCGGGUGAuaGU- -5'
5103 3' -58.5 NC_001798.1 + 153000 0.67 0.75275
Target:  5'- gCCgGCgcggGGCGGUCGCcggggcggaguccggGCCCGCg--CGg -3'
miRNA:   3'- -GGgCGa---CCGCCAGUG---------------CGGGUGauaGU- -5'
5103 3' -58.5 NC_001798.1 + 151343 1.1 0.001458
Target:  5'- aCCCGCUGGCGGUCACGCCCACUAUCAg -3'
miRNA:   3'- -GGGCGACCGCCAGUGCGGGUGAUAGU- -5'
5103 3' -58.5 NC_001798.1 + 150269 0.67 0.75837
Target:  5'- aCCCGCgcgcGuCGGUCGCGCCUGCc---- -3'
miRNA:   3'- -GGGCGac--C-GCCAGUGCGGGUGauagu -5'
5103 3' -58.5 NC_001798.1 + 142337 0.67 0.767649
Target:  5'- -gCGCUGGUGGg-ACGCCCAUa---- -3'
miRNA:   3'- ggGCGACCGCCagUGCGGGUGauagu -5'
5103 3' -58.5 NC_001798.1 + 138400 0.7 0.5912
Target:  5'- aCCCGCgcGGCGccagccacccCGCGCUCGCUGUCGc -3'
miRNA:   3'- -GGGCGa-CCGCca--------GUGCGGGUGAUAGU- -5'
5103 3' -58.5 NC_001798.1 + 138146 0.71 0.541957
Target:  5'- gCUGCU-GCGGUCGCGCCCcCggGUCc -3'
miRNA:   3'- gGGCGAcCGCCAGUGCGGGuGa-UAGu -5'
5103 3' -58.5 NC_001798.1 + 134429 0.68 0.720271
Target:  5'- aCCCGCUGGCccuGUC-CGCgCGC-GUCGc -3'
miRNA:   3'- -GGGCGACCGc--CAGuGCGgGUGaUAGU- -5'
5103 3' -58.5 NC_001798.1 + 133032 0.68 0.729926
Target:  5'- gCCgGCcgaGGUGGUCGCGCUCAUgcgCGg -3'
miRNA:   3'- -GGgCGa--CCGCCAGUGCGGGUGauaGU- -5'
5103 3' -58.5 NC_001798.1 + 127638 0.68 0.729926
Target:  5'- gCUGCUGGUgcuGGUCuccCGCCU-CUGUCAc -3'
miRNA:   3'- gGGCGACCG---CCAGu--GCGGGuGAUAGU- -5'
5103 3' -58.5 NC_001798.1 + 125068 0.69 0.641143
Target:  5'- gCCCGUgGGUGGcCACGUCCACc---- -3'
miRNA:   3'- -GGGCGaCCGCCaGUGCGGGUGauagu -5'
5103 3' -58.5 NC_001798.1 + 113518 0.67 0.776813
Target:  5'- cCCUGgUGGCGG-C-CGCCCAUgagacguUCAg -3'
miRNA:   3'- -GGGCgACCGCCaGuGCGGGUGau-----AGU- -5'
5103 3' -58.5 NC_001798.1 + 109502 0.66 0.820613
Target:  5'- gCCUGgUGGCGcaCGCGCUgGgCUAUCAg -3'
miRNA:   3'- -GGGCgACCGCcaGUGCGGgU-GAUAGU- -5'
5103 3' -58.5 NC_001798.1 + 109325 0.69 0.661125
Target:  5'- aCCUGCUgGGCuuUUugGCCCACUcgCGc -3'
miRNA:   3'- -GGGCGA-CCGccAGugCGGGUGAuaGU- -5'
5103 3' -58.5 NC_001798.1 + 104102 0.67 0.75837
Target:  5'- gCCGcCUGGCGG--GCGCCCGacgacaUAUCc -3'
miRNA:   3'- gGGC-GACCGCCagUGCGGGUg-----AUAGu -5'
5103 3' -58.5 NC_001798.1 + 102537 0.66 0.81215
Target:  5'- cCCCGC-GGcCGG-CAgGCCgCACgcgGUCAg -3'
miRNA:   3'- -GGGCGaCC-GCCaGUgCGG-GUGa--UAGU- -5'
5103 3' -58.5 NC_001798.1 + 102381 0.68 0.729926
Target:  5'- aCCCGcCUGGCGGUCGgCGgcgauggccCCCACc---- -3'
miRNA:   3'- -GGGC-GACCGCCAGU-GC---------GGGUGauagu -5'
5103 3' -58.5 NC_001798.1 + 100572 0.66 0.828913
Target:  5'- gCCC-CUGGaGGUCuacACGCgCCACgagAUCAa -3'
miRNA:   3'- -GGGcGACCgCCAG---UGCG-GGUGa--UAGU- -5'
5103 3' -58.5 NC_001798.1 + 96401 0.66 0.820613
Target:  5'- cCCCGCUGuCGGUCAC-CCUGgaGUUg -3'
miRNA:   3'- -GGGCGACcGCCAGUGcGGGUgaUAGu -5'
5103 3' -58.5 NC_001798.1 + 96162 0.68 0.739499
Target:  5'- aCUCGCcaUGGCGGcCGCGCCCcCg---- -3'
miRNA:   3'- -GGGCG--ACCGCCaGUGCGGGuGauagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.