miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5103 5' -55 NC_001798.1 + 52505 0.69 0.815474
Target:  5'- --gGCGCAGGGacGACGCGgcgGccGCGCGc -3'
miRNA:   3'- caaCGUGUCCC--CUGUGCa--CaaCGCGU- -5'
5103 5' -55 NC_001798.1 + 34082 0.68 0.824205
Target:  5'- gGUUGUugGGGGGgggugaccgGCGCGUGgggGCGg- -3'
miRNA:   3'- -CAACGugUCCCC---------UGUGCACaa-CGCgu -5'
5103 5' -55 NC_001798.1 + 150337 0.68 0.849282
Target:  5'- -aUGCGCGaccGGGGCGCGcGgUGCGCGu -3'
miRNA:   3'- caACGUGUc--CCCUGUGCaCaACGCGU- -5'
5103 5' -55 NC_001798.1 + 1559 0.68 0.86037
Target:  5'- --cGCGC-GGGGACaugggcaccaGCGUGUcggggccgaagcgcgUGCGCAc -3'
miRNA:   3'- caaCGUGuCCCCUG----------UGCACA---------------ACGCGU- -5'
5103 5' -55 NC_001798.1 + 71105 0.67 0.87253
Target:  5'- -gUGCGCGcccccGGGGACGCugaUGgcGCGCGu -3'
miRNA:   3'- caACGUGU-----CCCCUGUGc--ACaaCGCGU- -5'
5103 5' -55 NC_001798.1 + 89509 0.67 0.879843
Target:  5'- --gGCGCAGGaGGCACGUGaaGaCGCGg -3'
miRNA:   3'- caaCGUGUCCcCUGUGCACaaC-GCGU- -5'
5103 5' -55 NC_001798.1 + 29976 0.67 0.879843
Target:  5'- --cGguCGGGGGACcccCGUGggccgUGCGCc -3'
miRNA:   3'- caaCguGUCCCCUGu--GCACa----ACGCGu -5'
5103 5' -55 NC_001798.1 + 3427 0.67 0.89378
Target:  5'- --cGCcaGCAGGGG-CGCGUag-GCGCGg -3'
miRNA:   3'- caaCG--UGUCCCCuGUGCAcaaCGCGU- -5'
5103 5' -55 NC_001798.1 + 36792 0.67 0.89378
Target:  5'- -gUGCAC-GGGGACcuCG-GUUGgGCGa -3'
miRNA:   3'- caACGUGuCCCCUGu-GCaCAACgCGU- -5'
5103 5' -55 NC_001798.1 + 56183 0.67 0.900396
Target:  5'- --gGCGgGGGGGugGgGUGggGUGUg -3'
miRNA:   3'- caaCGUgUCCCCugUgCACaaCGCGu -5'
5103 5' -55 NC_001798.1 + 110275 0.66 0.906145
Target:  5'- --gGCGCGaccucggccucguGGGGGC-CGUGUuucUGCGCu -3'
miRNA:   3'- caaCGUGU-------------CCCCUGuGCACA---ACGCGu -5'
5103 5' -55 NC_001798.1 + 27348 0.66 0.906772
Target:  5'- -gUGUGCGGGcGGGCGgGUGcuugGUGCAa -3'
miRNA:   3'- caACGUGUCC-CCUGUgCACaa--CGCGU- -5'
5103 5' -55 NC_001798.1 + 27225 0.66 0.906772
Target:  5'- cGggGCGCGGGGGAgGCG-GccGCGgGg -3'
miRNA:   3'- -CaaCGUGUCCCCUgUGCaCaaCGCgU- -5'
5103 5' -55 NC_001798.1 + 50093 0.66 0.912905
Target:  5'- -cUGCGgAGGccGGGCugGUGgcgccGCGCAu -3'
miRNA:   3'- caACGUgUCC--CCUGugCACaa---CGCGU- -5'
5103 5' -55 NC_001798.1 + 71475 0.66 0.918216
Target:  5'- aUUGCccuuGCGGGGGcgaACGUGUUcgggcucGCGCGg -3'
miRNA:   3'- cAACG----UGUCCCCug-UGCACAA-------CGCGU- -5'
5103 5' -55 NC_001798.1 + 2263 0.66 0.924435
Target:  5'- --cGC-CGGGGGGCGgGgcg-GCGCAg -3'
miRNA:   3'- caaCGuGUCCCCUGUgCacaaCGCGU- -5'
5103 5' -55 NC_001798.1 + 92614 0.66 0.929831
Target:  5'- --aGCACgagacgacGGGGGACGCGc--UGUGCGa -3'
miRNA:   3'- caaCGUG--------UCCCCUGUGCacaACGCGU- -5'
5103 5' -55 NC_001798.1 + 86152 0.65 0.934979
Target:  5'- --cGCACcGcGGGGCGCGca-UGCGCGa -3'
miRNA:   3'- caaCGUGuC-CCCUGUGCacaACGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.