miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5103 5' -55 NC_001798.1 + 151385 1.08 0.003449
Target:  5'- uGUUGCACAGGGGACACGUGUUGCGCAa -3'
miRNA:   3'- -CAACGUGUCCCCUGUGCACAACGCGU- -5'
5103 5' -55 NC_001798.1 + 55751 0.74 0.514968
Target:  5'- --cGCACGGGGGAUAaggGUGgccgGCGCGc -3'
miRNA:   3'- caaCGUGUCCCCUGUg--CACaa--CGCGU- -5'
5103 5' -55 NC_001798.1 + 98532 0.73 0.555224
Target:  5'- -aUGCGCGGGGGGgGCuUGauUUGCGCGc -3'
miRNA:   3'- caACGUGUCCCCUgUGcAC--AACGCGU- -5'
5103 5' -55 NC_001798.1 + 142145 0.72 0.603605
Target:  5'- --gGCACAGGuGGuGCACGUGUUugagucagggacgcGCGCGg -3'
miRNA:   3'- caaCGUGUCC-CC-UGUGCACAA--------------CGCGU- -5'
5103 5' -55 NC_001798.1 + 12705 0.72 0.617104
Target:  5'- gGUUGCugGGGGcGGCggggGCGUGgugcgGCGCGa -3'
miRNA:   3'- -CAACGugUCCC-CUG----UGCACaa---CGCGU- -5'
5103 5' -55 NC_001798.1 + 5978 0.71 0.67938
Target:  5'- --cGCAcCAGGGGACAcCG-GcUGCGCGg -3'
miRNA:   3'- caaCGU-GUCCCCUGU-GCaCaACGCGU- -5'
5103 5' -55 NC_001798.1 + 86260 0.71 0.689671
Target:  5'- --aGCACGgccGGGGGCGCGg---GCGCAc -3'
miRNA:   3'- caaCGUGU---CCCCUGUGCacaaCGCGU- -5'
5103 5' -55 NC_001798.1 + 81736 0.7 0.719202
Target:  5'- -gUGCGCAGGucccgccGGACGCGUGccaaaucGCGCGc -3'
miRNA:   3'- caACGUGUCC-------CCUGUGCACaa-----CGCGU- -5'
5103 5' -55 NC_001798.1 + 150468 0.7 0.72021
Target:  5'- --cGCGCGGGGG-CGCGcGgcGCGCc -3'
miRNA:   3'- caaCGUGUCCCCuGUGCaCaaCGCGu -5'
5103 5' -55 NC_001798.1 + 13054 0.7 0.758822
Target:  5'- -aUGCGCAGGGGGagaGCGUacuugcaGgagGCGCGg -3'
miRNA:   3'- caACGUGUCCCCUg--UGCA-------Caa-CGCGU- -5'
5103 5' -55 NC_001798.1 + 31333 0.7 0.759791
Target:  5'- -cUGCggccgGCGGGGGGCGCGcGcagGCGCGg -3'
miRNA:   3'- caACG-----UGUCCCCUGUGCaCaa-CGCGU- -5'
5103 5' -55 NC_001798.1 + 90388 0.7 0.769419
Target:  5'- --cGCcguCGGGGGGCGCG-GUUGgGCc -3'
miRNA:   3'- caaCGu--GUCCCCUGUGCaCAACgCGu -5'
5103 5' -55 NC_001798.1 + 2956 0.69 0.77892
Target:  5'- --cGCGCAGgcGGGGCGCGUcGgcGUGCGg -3'
miRNA:   3'- caaCGUGUC--CCCUGUGCA-CaaCGCGU- -5'
5103 5' -55 NC_001798.1 + 102037 0.69 0.77892
Target:  5'- gGUUGgGCGGGGGuCucCGUGUcUGCGUg -3'
miRNA:   3'- -CAACgUGUCCCCuGu-GCACA-ACGCGu -5'
5103 5' -55 NC_001798.1 + 133749 0.69 0.788285
Target:  5'- -cUGCGCGcgcccgcguGGGGGCGC-UGcUUGCGCAc -3'
miRNA:   3'- caACGUGU---------CCCCUGUGcAC-AACGCGU- -5'
5103 5' -55 NC_001798.1 + 138451 0.69 0.788285
Target:  5'- --aGCACcuugacGGACGCgGUGUUGCGCAg -3'
miRNA:   3'- caaCGUGucc---CCUGUG-CACAACGCGU- -5'
5103 5' -55 NC_001798.1 + 154281 0.69 0.788285
Target:  5'- -gUGCGCAGcccGGGC-CGUGUUGCGg- -3'
miRNA:   3'- caACGUGUCc--CCUGuGCACAACGCgu -5'
5103 5' -55 NC_001798.1 + 30847 0.69 0.806571
Target:  5'- --cGCugGGGGGACACacgGUccGCGCc -3'
miRNA:   3'- caaCGugUCCCCUGUGca-CAa-CGCGu -5'
5103 5' -55 NC_001798.1 + 30177 0.69 0.806571
Target:  5'- --gGaCACGGGGGACACG----GCGCGg -3'
miRNA:   3'- caaC-GUGUCCCCUGUGCacaaCGCGU- -5'
5103 5' -55 NC_001798.1 + 52505 0.69 0.815474
Target:  5'- --gGCGCAGGGacGACGCGgcgGccGCGCGc -3'
miRNA:   3'- caaCGUGUCCC--CUGUGCa--CaaCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.