miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5103 5' -55 NC_001798.1 + 1559 0.68 0.86037
Target:  5'- --cGCGC-GGGGACaugggcaccaGCGUGUcggggccgaagcgcgUGCGCAc -3'
miRNA:   3'- caaCGUGuCCCCUG----------UGCACA---------------ACGCGU- -5'
5103 5' -55 NC_001798.1 + 2263 0.66 0.924435
Target:  5'- --cGC-CGGGGGGCGgGgcg-GCGCAg -3'
miRNA:   3'- caaCGuGUCCCCUGUgCacaaCGCGU- -5'
5103 5' -55 NC_001798.1 + 2956 0.69 0.77892
Target:  5'- --cGCGCAGgcGGGGCGCGUcGgcGUGCGg -3'
miRNA:   3'- caaCGUGUC--CCCUGUGCA-CaaCGCGU- -5'
5103 5' -55 NC_001798.1 + 3427 0.67 0.89378
Target:  5'- --cGCcaGCAGGGG-CGCGUag-GCGCGg -3'
miRNA:   3'- caaCG--UGUCCCCuGUGCAcaaCGCGU- -5'
5103 5' -55 NC_001798.1 + 5978 0.71 0.67938
Target:  5'- --cGCAcCAGGGGACAcCG-GcUGCGCGg -3'
miRNA:   3'- caaCGU-GUCCCCUGU-GCaCaACGCGU- -5'
5103 5' -55 NC_001798.1 + 12705 0.72 0.617104
Target:  5'- gGUUGCugGGGGcGGCggggGCGUGgugcgGCGCGa -3'
miRNA:   3'- -CAACGugUCCC-CUG----UGCACaa---CGCGU- -5'
5103 5' -55 NC_001798.1 + 13054 0.7 0.758822
Target:  5'- -aUGCGCAGGGGGagaGCGUacuugcaGgagGCGCGg -3'
miRNA:   3'- caACGUGUCCCCUg--UGCA-------Caa-CGCGU- -5'
5103 5' -55 NC_001798.1 + 24821 0.69 0.815474
Target:  5'- -cUGCGCGGGGaccuGCGCGUGgccgGCgGCAg -3'
miRNA:   3'- caACGUGUCCCc---UGUGCACaa--CG-CGU- -5'
5103 5' -55 NC_001798.1 + 27225 0.66 0.906772
Target:  5'- cGggGCGCGGGGGAgGCG-GccGCGgGg -3'
miRNA:   3'- -CaaCGUGUCCCCUgUGCaCaaCGCgU- -5'
5103 5' -55 NC_001798.1 + 27348 0.66 0.906772
Target:  5'- -gUGUGCGGGcGGGCGgGUGcuugGUGCAa -3'
miRNA:   3'- caACGUGUCC-CCUGUgCACaa--CGCGU- -5'
5103 5' -55 NC_001798.1 + 29976 0.67 0.879843
Target:  5'- --cGguCGGGGGACcccCGUGggccgUGCGCc -3'
miRNA:   3'- caaCguGUCCCCUGu--GCACa----ACGCGu -5'
5103 5' -55 NC_001798.1 + 30177 0.69 0.806571
Target:  5'- --gGaCACGGGGGACACG----GCGCGg -3'
miRNA:   3'- caaC-GUGUCCCCUGUGCacaaCGCGU- -5'
5103 5' -55 NC_001798.1 + 30847 0.69 0.806571
Target:  5'- --cGCugGGGGGACACacgGUccGCGCc -3'
miRNA:   3'- caaCGugUCCCCUGUGca-CAa-CGCGu -5'
5103 5' -55 NC_001798.1 + 31333 0.7 0.759791
Target:  5'- -cUGCggccgGCGGGGGGCGCGcGcagGCGCGg -3'
miRNA:   3'- caACG-----UGUCCCCUGUGCaCaa-CGCGU- -5'
5103 5' -55 NC_001798.1 + 34082 0.68 0.824205
Target:  5'- gGUUGUugGGGGGgggugaccgGCGCGUGgggGCGg- -3'
miRNA:   3'- -CAACGugUCCCC---------UGUGCACaa-CGCgu -5'
5103 5' -55 NC_001798.1 + 36792 0.67 0.89378
Target:  5'- -gUGCAC-GGGGACcuCG-GUUGgGCGa -3'
miRNA:   3'- caACGUGuCCCCUGu-GCaCAACgCGU- -5'
5103 5' -55 NC_001798.1 + 50093 0.66 0.912905
Target:  5'- -cUGCGgAGGccGGGCugGUGgcgccGCGCAu -3'
miRNA:   3'- caACGUgUCC--CCUGugCACaa---CGCGU- -5'
5103 5' -55 NC_001798.1 + 52505 0.69 0.815474
Target:  5'- --gGCGCAGGGacGACGCGgcgGccGCGCGc -3'
miRNA:   3'- caaCGUGUCCC--CUGUGCa--CaaCGCGU- -5'
5103 5' -55 NC_001798.1 + 55751 0.74 0.514968
Target:  5'- --cGCACGGGGGAUAaggGUGgccgGCGCGc -3'
miRNA:   3'- caaCGUGUCCCCUGUg--CACaa--CGCGU- -5'
5103 5' -55 NC_001798.1 + 56183 0.67 0.900396
Target:  5'- --gGCGgGGGGGugGgGUGggGUGUg -3'
miRNA:   3'- caaCGUgUCCCCugUgCACaaCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.