Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5103 | 5' | -55 | NC_001798.1 | + | 1559 | 0.68 | 0.86037 |
Target: 5'- --cGCGC-GGGGACaugggcaccaGCGUGUcggggccgaagcgcgUGCGCAc -3' miRNA: 3'- caaCGUGuCCCCUG----------UGCACA---------------ACGCGU- -5' |
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5103 | 5' | -55 | NC_001798.1 | + | 2263 | 0.66 | 0.924435 |
Target: 5'- --cGC-CGGGGGGCGgGgcg-GCGCAg -3' miRNA: 3'- caaCGuGUCCCCUGUgCacaaCGCGU- -5' |
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5103 | 5' | -55 | NC_001798.1 | + | 2956 | 0.69 | 0.77892 |
Target: 5'- --cGCGCAGgcGGGGCGCGUcGgcGUGCGg -3' miRNA: 3'- caaCGUGUC--CCCUGUGCA-CaaCGCGU- -5' |
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5103 | 5' | -55 | NC_001798.1 | + | 3427 | 0.67 | 0.89378 |
Target: 5'- --cGCcaGCAGGGG-CGCGUag-GCGCGg -3' miRNA: 3'- caaCG--UGUCCCCuGUGCAcaaCGCGU- -5' |
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5103 | 5' | -55 | NC_001798.1 | + | 5978 | 0.71 | 0.67938 |
Target: 5'- --cGCAcCAGGGGACAcCG-GcUGCGCGg -3' miRNA: 3'- caaCGU-GUCCCCUGU-GCaCaACGCGU- -5' |
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5103 | 5' | -55 | NC_001798.1 | + | 12705 | 0.72 | 0.617104 |
Target: 5'- gGUUGCugGGGGcGGCggggGCGUGgugcgGCGCGa -3' miRNA: 3'- -CAACGugUCCC-CUG----UGCACaa---CGCGU- -5' |
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5103 | 5' | -55 | NC_001798.1 | + | 13054 | 0.7 | 0.758822 |
Target: 5'- -aUGCGCAGGGGGagaGCGUacuugcaGgagGCGCGg -3' miRNA: 3'- caACGUGUCCCCUg--UGCA-------Caa-CGCGU- -5' |
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5103 | 5' | -55 | NC_001798.1 | + | 24821 | 0.69 | 0.815474 |
Target: 5'- -cUGCGCGGGGaccuGCGCGUGgccgGCgGCAg -3' miRNA: 3'- caACGUGUCCCc---UGUGCACaa--CG-CGU- -5' |
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5103 | 5' | -55 | NC_001798.1 | + | 27225 | 0.66 | 0.906772 |
Target: 5'- cGggGCGCGGGGGAgGCG-GccGCGgGg -3' miRNA: 3'- -CaaCGUGUCCCCUgUGCaCaaCGCgU- -5' |
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5103 | 5' | -55 | NC_001798.1 | + | 27348 | 0.66 | 0.906772 |
Target: 5'- -gUGUGCGGGcGGGCGgGUGcuugGUGCAa -3' miRNA: 3'- caACGUGUCC-CCUGUgCACaa--CGCGU- -5' |
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5103 | 5' | -55 | NC_001798.1 | + | 29976 | 0.67 | 0.879843 |
Target: 5'- --cGguCGGGGGACcccCGUGggccgUGCGCc -3' miRNA: 3'- caaCguGUCCCCUGu--GCACa----ACGCGu -5' |
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5103 | 5' | -55 | NC_001798.1 | + | 30177 | 0.69 | 0.806571 |
Target: 5'- --gGaCACGGGGGACACG----GCGCGg -3' miRNA: 3'- caaC-GUGUCCCCUGUGCacaaCGCGU- -5' |
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5103 | 5' | -55 | NC_001798.1 | + | 30847 | 0.69 | 0.806571 |
Target: 5'- --cGCugGGGGGACACacgGUccGCGCc -3' miRNA: 3'- caaCGugUCCCCUGUGca-CAa-CGCGu -5' |
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5103 | 5' | -55 | NC_001798.1 | + | 31333 | 0.7 | 0.759791 |
Target: 5'- -cUGCggccgGCGGGGGGCGCGcGcagGCGCGg -3' miRNA: 3'- caACG-----UGUCCCCUGUGCaCaa-CGCGU- -5' |
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5103 | 5' | -55 | NC_001798.1 | + | 34082 | 0.68 | 0.824205 |
Target: 5'- gGUUGUugGGGGGgggugaccgGCGCGUGgggGCGg- -3' miRNA: 3'- -CAACGugUCCCC---------UGUGCACaa-CGCgu -5' |
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5103 | 5' | -55 | NC_001798.1 | + | 36792 | 0.67 | 0.89378 |
Target: 5'- -gUGCAC-GGGGACcuCG-GUUGgGCGa -3' miRNA: 3'- caACGUGuCCCCUGu-GCaCAACgCGU- -5' |
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5103 | 5' | -55 | NC_001798.1 | + | 50093 | 0.66 | 0.912905 |
Target: 5'- -cUGCGgAGGccGGGCugGUGgcgccGCGCAu -3' miRNA: 3'- caACGUgUCC--CCUGugCACaa---CGCGU- -5' |
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5103 | 5' | -55 | NC_001798.1 | + | 52505 | 0.69 | 0.815474 |
Target: 5'- --gGCGCAGGGacGACGCGgcgGccGCGCGc -3' miRNA: 3'- caaCGUGUCCC--CUGUGCa--CaaCGCGU- -5' |
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5103 | 5' | -55 | NC_001798.1 | + | 55751 | 0.74 | 0.514968 |
Target: 5'- --cGCACGGGGGAUAaggGUGgccgGCGCGc -3' miRNA: 3'- caaCGUGUCCCCUGUg--CACaa--CGCGU- -5' |
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5103 | 5' | -55 | NC_001798.1 | + | 56183 | 0.67 | 0.900396 |
Target: 5'- --gGCGgGGGGGugGgGUGggGUGUg -3' miRNA: 3'- caaCGUgUCCCCugUgCACaaCGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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