miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5103 5' -55 NC_001798.1 + 154281 0.69 0.788285
Target:  5'- -gUGCGCAGcccGGGC-CGUGUUGCGg- -3'
miRNA:   3'- caACGUGUCc--CCUGuGCACAACGCgu -5'
5103 5' -55 NC_001798.1 + 151385 1.08 0.003449
Target:  5'- uGUUGCACAGGGGACACGUGUUGCGCAa -3'
miRNA:   3'- -CAACGUGUCCCCUGUGCACAACGCGU- -5'
5103 5' -55 NC_001798.1 + 150468 0.7 0.72021
Target:  5'- --cGCGCGGGGG-CGCGcGgcGCGCc -3'
miRNA:   3'- caaCGUGUCCCCuGUGCaCaaCGCGu -5'
5103 5' -55 NC_001798.1 + 150337 0.68 0.849282
Target:  5'- -aUGCGCGaccGGGGCGCGcGgUGCGCGu -3'
miRNA:   3'- caACGUGUc--CCCUGUGCaCaACGCGU- -5'
5103 5' -55 NC_001798.1 + 142145 0.72 0.603605
Target:  5'- --gGCACAGGuGGuGCACGUGUUugagucagggacgcGCGCGg -3'
miRNA:   3'- caaCGUGUCC-CC-UGUGCACAA--------------CGCGU- -5'
5103 5' -55 NC_001798.1 + 138451 0.69 0.788285
Target:  5'- --aGCACcuugacGGACGCgGUGUUGCGCAg -3'
miRNA:   3'- caaCGUGucc---CCUGUG-CACAACGCGU- -5'
5103 5' -55 NC_001798.1 + 133749 0.69 0.788285
Target:  5'- -cUGCGCGcgcccgcguGGGGGCGC-UGcUUGCGCAc -3'
miRNA:   3'- caACGUGU---------CCCCUGUGcAC-AACGCGU- -5'
5103 5' -55 NC_001798.1 + 110275 0.66 0.906145
Target:  5'- --gGCGCGaccucggccucguGGGGGC-CGUGUuucUGCGCu -3'
miRNA:   3'- caaCGUGU-------------CCCCUGuGCACA---ACGCGu -5'
5103 5' -55 NC_001798.1 + 102037 0.69 0.77892
Target:  5'- gGUUGgGCGGGGGuCucCGUGUcUGCGUg -3'
miRNA:   3'- -CAACgUGUCCCCuGu-GCACA-ACGCGu -5'
5103 5' -55 NC_001798.1 + 98532 0.73 0.555224
Target:  5'- -aUGCGCGGGGGGgGCuUGauUUGCGCGc -3'
miRNA:   3'- caACGUGUCCCCUgUGcAC--AACGCGU- -5'
5103 5' -55 NC_001798.1 + 92614 0.66 0.929831
Target:  5'- --aGCACgagacgacGGGGGACGCGc--UGUGCGa -3'
miRNA:   3'- caaCGUG--------UCCCCUGUGCacaACGCGU- -5'
5103 5' -55 NC_001798.1 + 90388 0.7 0.769419
Target:  5'- --cGCcguCGGGGGGCGCG-GUUGgGCc -3'
miRNA:   3'- caaCGu--GUCCCCUGUGCaCAACgCGu -5'
5103 5' -55 NC_001798.1 + 89509 0.67 0.879843
Target:  5'- --gGCGCAGGaGGCACGUGaaGaCGCGg -3'
miRNA:   3'- caaCGUGUCCcCUGUGCACaaC-GCGU- -5'
5103 5' -55 NC_001798.1 + 86260 0.71 0.689671
Target:  5'- --aGCACGgccGGGGGCGCGg---GCGCAc -3'
miRNA:   3'- caaCGUGU---CCCCUGUGCacaaCGCGU- -5'
5103 5' -55 NC_001798.1 + 86152 0.65 0.934979
Target:  5'- --cGCACcGcGGGGCGCGca-UGCGCGa -3'
miRNA:   3'- caaCGUGuC-CCCUGUGCacaACGCGU- -5'
5103 5' -55 NC_001798.1 + 81736 0.7 0.719202
Target:  5'- -gUGCGCAGGucccgccGGACGCGUGccaaaucGCGCGc -3'
miRNA:   3'- caACGUGUCC-------CCUGUGCACaa-----CGCGU- -5'
5103 5' -55 NC_001798.1 + 71475 0.66 0.918216
Target:  5'- aUUGCccuuGCGGGGGcgaACGUGUUcgggcucGCGCGg -3'
miRNA:   3'- cAACG----UGUCCCCug-UGCACAA-------CGCGU- -5'
5103 5' -55 NC_001798.1 + 71105 0.67 0.87253
Target:  5'- -gUGCGCGcccccGGGGACGCugaUGgcGCGCGu -3'
miRNA:   3'- caACGUGU-----CCCCUGUGc--ACaaCGCGU- -5'
5103 5' -55 NC_001798.1 + 56183 0.67 0.900396
Target:  5'- --gGCGgGGGGGugGgGUGggGUGUg -3'
miRNA:   3'- caaCGUgUCCCCugUgCACaaCGCGu -5'
5103 5' -55 NC_001798.1 + 55751 0.74 0.514968
Target:  5'- --cGCACGGGGGAUAaggGUGgccgGCGCGc -3'
miRNA:   3'- caaCGUGUCCCCUGUg--CACaa--CGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.