miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5104 3' -56.9 NC_001798.1 + 27408 0.66 0.879133
Target:  5'- gACUgGCGucuucGGGGGGGCGGGGAgcuUGGGAg -3'
miRNA:   3'- gUGA-CGUc----UCCCUCUGUCUCU---GCCCU- -5'
5104 3' -56.9 NC_001798.1 + 15456 0.66 0.879133
Target:  5'- ---gGCGGGGGGucgcguggguAGACGuGGGCGGGGg -3'
miRNA:   3'- gugaCGUCUCCC----------UCUGUcUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 27547 0.66 0.879133
Target:  5'- gCGC-GCGGGGGGAGggGCGGcGcccGCGGGGg -3'
miRNA:   3'- -GUGaCGUCUCCCUC--UGUCuC---UGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 146071 0.66 0.886097
Target:  5'- aCACgggGgGGAGGGguccgGGGC-GAGGCGGGc -3'
miRNA:   3'- -GUGa--CgUCUCCC-----UCUGuCUCUGCCCu -5'
5104 3' -56.9 NC_001798.1 + 9666 0.66 0.886097
Target:  5'- gCGC-GCGGAGGGc-GCGG-GAUGGGGg -3'
miRNA:   3'- -GUGaCGUCUCCCucUGUCuCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 30150 0.66 0.849148
Target:  5'- aGCggGCGGGGGGccggGGugAGGGA-GGGAc -3'
miRNA:   3'- gUGa-CGUCUCCC----UCugUCUCUgCCCU- -5'
5104 3' -56.9 NC_001798.1 + 149818 0.67 0.841149
Target:  5'- cCGCccGCAGAGGaaGAGGCGGAGGa-GGAg -3'
miRNA:   3'- -GUGa-CGUCUCC--CUCUGUCUCUgcCCU- -5'
5104 3' -56.9 NC_001798.1 + 64151 0.68 0.798478
Target:  5'- uGCUcGCGG-GGGAGAC---GGCGGGAu -3'
miRNA:   3'- gUGA-CGUCuCCCUCUGucuCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 101834 0.68 0.798478
Target:  5'- uCGCgGCGGGGGGAGGCGuGGGucccgGCGGcGGc -3'
miRNA:   3'- -GUGaCGUCUCCCUCUGU-CUC-----UGCC-CU- -5'
5104 3' -56.9 NC_001798.1 + 33415 0.67 0.807343
Target:  5'- gGCUcGgGGAGGGAGG-AGGGGgGGGGu -3'
miRNA:   3'- gUGA-CgUCUCCCUCUgUCUCUgCCCU- -5'
5104 3' -56.9 NC_001798.1 + 13055 0.67 0.81605
Target:  5'- uGC-GCAGGGGGAGAgcguacuugcaGGAGGCGcGGGc -3'
miRNA:   3'- gUGaCGUCUCCCUCUg----------UCUCUGC-CCU- -5'
5104 3' -56.9 NC_001798.1 + 34610 0.67 0.81605
Target:  5'- aCGCggGCAaAGGGcGGCGGcGGCGGGGg -3'
miRNA:   3'- -GUGa-CGUcUCCCuCUGUCuCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 41463 0.67 0.824593
Target:  5'- ---cGCcGGGGGGGGCGGucGGCGGGc -3'
miRNA:   3'- gugaCGuCUCCCUCUGUCu-CUGCCCu -5'
5104 3' -56.9 NC_001798.1 + 32942 0.67 0.832961
Target:  5'- gACagGaAGuGGGGGugGGAGugGGGGg -3'
miRNA:   3'- gUGa-CgUCuCCCUCugUCUCugCCCU- -5'
5104 3' -56.9 NC_001798.1 + 61155 0.67 0.832961
Target:  5'- gGCU-CGG-GGGAGGgGGAGGgGGGGa -3'
miRNA:   3'- gUGAcGUCuCCCUCUgUCUCUgCCCU- -5'
5104 3' -56.9 NC_001798.1 + 23518 0.67 0.838712
Target:  5'- aCGCcGCGGGcGGGAcccucggcgcggacGACgaGGAGGCGGGGg -3'
miRNA:   3'- -GUGaCGUCU-CCCU--------------CUG--UCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 68154 0.67 0.841149
Target:  5'- --gUGUAGGGGGGGggaAguGGGAgGGGAa -3'
miRNA:   3'- gugACGUCUCCCUC---UguCUCUgCCCU- -5'
5104 3' -56.9 NC_001798.1 + 85331 0.67 0.841149
Target:  5'- cCACgGCAGAGGGAcucuUGGAcACGGGGc -3'
miRNA:   3'- -GUGaCGUCUCCCUcu--GUCUcUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 96026 0.67 0.841149
Target:  5'- aCACcgGCGGGGcGGgcGGGCGGGcGACGGGc -3'
miRNA:   3'- -GUGa-CGUCUC-CC--UCUGUCU-CUGCCCu -5'
5104 3' -56.9 NC_001798.1 + 36073 0.67 0.841149
Target:  5'- gGCUGCGGgcgcGGGGuaGGugGGuGGGCGGGu -3'
miRNA:   3'- gUGACGUC----UCCC--UCugUC-UCUGCCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.