Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 48531 | 0.71 | 0.632234 |
Target: 5'- gGCgagggGCgGGAGGGGcGGgAGGGGCGGGAg -3' miRNA: 3'- gUGa----CG-UCUCCCU-CUgUCUCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 48565 | 0.69 | 0.722932 |
Target: 5'- gGCgggagggGCgGGAGGGGcGGgAGGGGCGGGAg -3' miRNA: 3'- gUGa------CG-UCUCCCU-CUgUCUCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 48601 | 0.69 | 0.722932 |
Target: 5'- gGCgggagggGCgGGAGGGGcGGgAGGGGCGGGAg -3' miRNA: 3'- gUGa------CG-UCUCCCU-CUgUCUCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 60993 | 0.73 | 0.512002 |
Target: 5'- uCGCagGCGGAGGG-GGCGGAuGACGcGGAc -3' miRNA: 3'- -GUGa-CGUCUCCCuCUGUCU-CUGC-CCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 61155 | 0.67 | 0.832961 |
Target: 5'- gGCU-CGG-GGGAGGgGGAGGgGGGGa -3' miRNA: 3'- gUGAcGUCuCCCUCUgUCUCUgCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 64151 | 0.68 | 0.798478 |
Target: 5'- uGCUcGCGG-GGGAGAC---GGCGGGAu -3' miRNA: 3'- gUGA-CGUCuCCCUCUGucuCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 67165 | 0.69 | 0.692071 |
Target: 5'- gCACUcGUggccccauggaaaGGGGGGAGGaGGGGGCGGGGg -3' miRNA: 3'- -GUGA-CG-------------UCUCCCUCUgUCUCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 67699 | 0.7 | 0.672904 |
Target: 5'- aGCgGCGGGcccguGGGAGGCGGGGugGGcGGu -3' miRNA: 3'- gUGaCGUCU-----CCCUCUGUCUCugCC-CU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 68154 | 0.67 | 0.841149 |
Target: 5'- --gUGUAGGGGGGGggaAguGGGAgGGGAa -3' miRNA: 3'- gugACGUCUCCCUC---UguCUCUgCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 76647 | 0.66 | 0.87195 |
Target: 5'- gCGCUGCGGcAGGcGAGGgccaUGGAGGCGGc- -3' miRNA: 3'- -GUGACGUC-UCC-CUCU----GUCUCUGCCcu -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 78905 | 0.71 | 0.615936 |
Target: 5'- -cCUGCGGAGGucccuggaggaggccGAGGCGGAGugGGa- -3' miRNA: 3'- guGACGUCUCC---------------CUCUGUCUCugCCcu -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 81277 | 0.7 | 0.672904 |
Target: 5'- -cUUGCGGGGGGGGAUGGcGGAuCGGGu -3' miRNA: 3'- guGACGUCUCCCUCUGUC-UCU-GCCCu -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 85275 | 0.7 | 0.672904 |
Target: 5'- gCGCgagGCuucGGGGGGGCGGGGGcCGGGGu -3' miRNA: 3'- -GUGa--CGuc-UCCCUCUGUCUCU-GCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 85331 | 0.67 | 0.841149 |
Target: 5'- cCACgGCAGAGGGAcucuUGGAcACGGGGc -3' miRNA: 3'- -GUGaCGUCUCCCUcu--GUCUcUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 85820 | 0.78 | 0.26215 |
Target: 5'- --aUGaCGGGGGGGGGCGGGGGCGGGc -3' miRNA: 3'- gugAC-GUCUCCCUCUGUCUCUGCCCu -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 85914 | 0.7 | 0.672904 |
Target: 5'- gACUGCAccGAGGGcaAGcGCGGGGGCGGaGAc -3' miRNA: 3'- gUGACGU--CUCCC--UC-UGUCUCUGCC-CU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 86001 | 0.7 | 0.672904 |
Target: 5'- gCGCUggcGCAGGGGGGuGAgcCGGAGACGuGGGc -3' miRNA: 3'- -GUGA---CGUCUCCCU-CU--GUCUCUGC-CCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 89678 | 0.68 | 0.780309 |
Target: 5'- gCGCUGCGcGGGcccGGAGGCguAGuAGGCGGGGa -3' miRNA: 3'- -GUGACGU-CUC---CCUCUG--UC-UCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 96026 | 0.67 | 0.841149 |
Target: 5'- aCACcgGCGGGGcGGgcGGGCGGGcGACGGGc -3' miRNA: 3'- -GUGa-CGUCUC-CC--UCUGUCU-CUGCCCu -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 97522 | 0.72 | 0.521736 |
Target: 5'- cCGCcGCGGAggagGGGGGGCGGAGGCGuGGc -3' miRNA: 3'- -GUGaCGUCU----CCCUCUGUCUCUGC-CCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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