miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5104 3' -56.9 NC_001798.1 + 27318 0.71 0.6017
Target:  5'- uGgaGgGGAGGGAGGgGGuGGCGGGGa -3'
miRNA:   3'- gUgaCgUCUCCCUCUgUCuCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 27408 0.66 0.879133
Target:  5'- gACUgGCGucuucGGGGGGGCGGGGAgcuUGGGAg -3'
miRNA:   3'- gUGA-CGUc----UCCCUCUGUCUCU---GCCCU- -5'
5104 3' -56.9 NC_001798.1 + 27547 0.66 0.879133
Target:  5'- gCGC-GCGGGGGGAGggGCGGcGcccGCGGGGg -3'
miRNA:   3'- -GUGaCGUCUCCCUC--UGUCuC---UGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 27586 0.7 0.672904
Target:  5'- gGCUcCGGGGGaGGGACGGGGAaGGGGg -3'
miRNA:   3'- gUGAcGUCUCC-CUCUGUCUCUgCCCU- -5'
5104 3' -56.9 NC_001798.1 + 29897 0.69 0.697088
Target:  5'- gGCUGCGGguuGGGGguggucgcgggcgguGGGCucGGGGGCGGGAc -3'
miRNA:   3'- gUGACGUC---UCCC---------------UCUG--UCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 30026 0.69 0.693075
Target:  5'- ---gGC-GAGGGAGGCAGGGaggagcccgagaGCGGGGg -3'
miRNA:   3'- gugaCGuCUCCCUCUGUCUC------------UGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 30150 0.66 0.849148
Target:  5'- aGCggGCGGGGGGccggGGugAGGGA-GGGAc -3'
miRNA:   3'- gUGa-CGUCUCCC----UCugUCUCUgCCCU- -5'
5104 3' -56.9 NC_001798.1 + 30950 0.69 0.722932
Target:  5'- ---gGCGGGGGGcGGGCGGgggucGGGCGGGGg -3'
miRNA:   3'- gugaCGUCUCCC-UCUGUC-----UCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 31864 0.66 0.854632
Target:  5'- aCGCcGCGGAGGGGGcgGCggcccgcccccggaAGAGGCGcGGGu -3'
miRNA:   3'- -GUGaCGUCUCCCUC--UG--------------UCUCUGC-CCU- -5'
5104 3' -56.9 NC_001798.1 + 32906 0.73 0.502343
Target:  5'- ---gGCAGGGGGAgGugGGGGGgGGGAa -3'
miRNA:   3'- gugaCGUCUCCCU-CugUCUCUgCCCU- -5'
5104 3' -56.9 NC_001798.1 + 32942 0.67 0.832961
Target:  5'- gACagGaAGuGGGGGugGGAGugGGGGg -3'
miRNA:   3'- gUGa-CgUCuCCCUCugUCUCugCCCU- -5'
5104 3' -56.9 NC_001798.1 + 33139 0.72 0.541413
Target:  5'- cCGC-GCAG-GGGGGcCGGGGAUGGGGg -3'
miRNA:   3'- -GUGaCGUCuCCCUCuGUCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 33415 0.67 0.807343
Target:  5'- gGCUcGgGGAGGGAGG-AGGGGgGGGGu -3'
miRNA:   3'- gUGA-CgUCUCCCUCUgUCUCUgCCCU- -5'
5104 3' -56.9 NC_001798.1 + 33796 0.66 0.864555
Target:  5'- gGCUGC--GGGGAGACucccaucGGGGCGaGGGg -3'
miRNA:   3'- gUGACGucUCCCUCUGu------CUCUGC-CCU- -5'
5104 3' -56.9 NC_001798.1 + 34610 0.67 0.81605
Target:  5'- aCGCggGCAaAGGGcGGCGGcGGCGGGGg -3'
miRNA:   3'- -GUGa-CGUcUCCCuCUGUCuCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 35116 0.66 0.856952
Target:  5'- -----gAGGGGGAGGUAGGGAgGGGAg -3'
miRNA:   3'- gugacgUCUCCCUCUGUCUCUgCCCU- -5'
5104 3' -56.9 NC_001798.1 + 36073 0.67 0.841149
Target:  5'- gGCUGCGGgcgcGGGGuaGGugGGuGGGCGGGu -3'
miRNA:   3'- gUGACGUC----UCCC--UCugUC-UCUGCCCu -5'
5104 3' -56.9 NC_001798.1 + 39435 0.66 0.849148
Target:  5'- cCGCgUGCGGGGGGgucagGGACAGcgccaucagcGGAgGGGGg -3'
miRNA:   3'- -GUG-ACGUCUCCC-----UCUGUC----------UCUgCCCU- -5'
5104 3' -56.9 NC_001798.1 + 41463 0.67 0.824593
Target:  5'- ---cGCcGGGGGGGGCGGucGGCGGGc -3'
miRNA:   3'- gugaCGuCUCCCUCUGUCu-CUGCCCu -5'
5104 3' -56.9 NC_001798.1 + 44833 0.69 0.693075
Target:  5'- -cCUGCgaacccGGAGGGGGugGG-GugGGGGa -3'
miRNA:   3'- guGACG------UCUCCCUCugUCuCugCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.