miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5104 3' -56.9 NC_001798.1 + 85820 0.78 0.26215
Target:  5'- --aUGaCGGGGGGGGGCGGGGGCGGGc -3'
miRNA:   3'- gugAC-GUCUCCCUCUGUCUCUGCCCu -5'
5104 3' -56.9 NC_001798.1 + 85331 0.67 0.841149
Target:  5'- cCACgGCAGAGGGAcucuUGGAcACGGGGc -3'
miRNA:   3'- -GUGaCGUCUCCCUcu--GUCUcUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 85275 0.7 0.672904
Target:  5'- gCGCgagGCuucGGGGGGGCGGGGGcCGGGGu -3'
miRNA:   3'- -GUGa--CGuc-UCCCUCUGUCUCU-GCCCU- -5'
5104 3' -56.9 NC_001798.1 + 81277 0.7 0.672904
Target:  5'- -cUUGCGGGGGGGGAUGGcGGAuCGGGu -3'
miRNA:   3'- guGACGUCUCCCUCUGUC-UCU-GCCCu -5'
5104 3' -56.9 NC_001798.1 + 78905 0.71 0.615936
Target:  5'- -cCUGCGGAGGucccuggaggaggccGAGGCGGAGugGGa- -3'
miRNA:   3'- guGACGUCUCC---------------CUCUGUCUCugCCcu -5'
5104 3' -56.9 NC_001798.1 + 76647 0.66 0.87195
Target:  5'- gCGCUGCGGcAGGcGAGGgccaUGGAGGCGGc- -3'
miRNA:   3'- -GUGACGUC-UCC-CUCU----GUCUCUGCCcu -5'
5104 3' -56.9 NC_001798.1 + 68154 0.67 0.841149
Target:  5'- --gUGUAGGGGGGGggaAguGGGAgGGGAa -3'
miRNA:   3'- gugACGUCUCCCUC---UguCUCUgCCCU- -5'
5104 3' -56.9 NC_001798.1 + 67699 0.7 0.672904
Target:  5'- aGCgGCGGGcccguGGGAGGCGGGGugGGcGGu -3'
miRNA:   3'- gUGaCGUCU-----CCCUCUGUCUCugCC-CU- -5'
5104 3' -56.9 NC_001798.1 + 67165 0.69 0.692071
Target:  5'- gCACUcGUggccccauggaaaGGGGGGAGGaGGGGGCGGGGg -3'
miRNA:   3'- -GUGA-CG-------------UCUCCCUCUgUCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 64151 0.68 0.798478
Target:  5'- uGCUcGCGG-GGGAGAC---GGCGGGAu -3'
miRNA:   3'- gUGA-CGUCuCCCUCUGucuCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 61155 0.67 0.832961
Target:  5'- gGCU-CGG-GGGAGGgGGAGGgGGGGa -3'
miRNA:   3'- gUGAcGUCuCCCUCUgUCUCUgCCCU- -5'
5104 3' -56.9 NC_001798.1 + 60993 0.73 0.512002
Target:  5'- uCGCagGCGGAGGG-GGCGGAuGACGcGGAc -3'
miRNA:   3'- -GUGa-CGUCUCCCuCUGUCU-CUGC-CCU- -5'
5104 3' -56.9 NC_001798.1 + 48601 0.69 0.722932
Target:  5'- gGCgggagggGCgGGAGGGGcGGgAGGGGCGGGAg -3'
miRNA:   3'- gUGa------CG-UCUCCCU-CUgUCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 48565 0.69 0.722932
Target:  5'- gGCgggagggGCgGGAGGGGcGGgAGGGGCGGGAg -3'
miRNA:   3'- gUGa------CG-UCUCCCU-CUgUCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 48531 0.71 0.632234
Target:  5'- gGCgagggGCgGGAGGGGcGGgAGGGGCGGGAg -3'
miRNA:   3'- gUGa----CG-UCUCCCU-CUgUCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 44833 0.69 0.693075
Target:  5'- -cCUGCgaacccGGAGGGGGugGG-GugGGGGa -3'
miRNA:   3'- guGACG------UCUCCCUCugUCuCugCCCU- -5'
5104 3' -56.9 NC_001798.1 + 41463 0.67 0.824593
Target:  5'- ---cGCcGGGGGGGGCGGucGGCGGGc -3'
miRNA:   3'- gugaCGuCUCCCUCUGUCu-CUGCCCu -5'
5104 3' -56.9 NC_001798.1 + 39435 0.66 0.849148
Target:  5'- cCGCgUGCGGGGGGgucagGGACAGcgccaucagcGGAgGGGGg -3'
miRNA:   3'- -GUG-ACGUCUCCC-----UCUGUC----------UCUgCCCU- -5'
5104 3' -56.9 NC_001798.1 + 36073 0.67 0.841149
Target:  5'- gGCUGCGGgcgcGGGGuaGGugGGuGGGCGGGu -3'
miRNA:   3'- gUGACGUC----UCCC--UCugUC-UCUGCCCu -5'
5104 3' -56.9 NC_001798.1 + 35116 0.66 0.856952
Target:  5'- -----gAGGGGGAGGUAGGGAgGGGAg -3'
miRNA:   3'- gugacgUCUCCCUCUGUCUCUgCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.