miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5104 3' -56.9 NC_001798.1 + 153801 0.68 0.789464
Target:  5'- gGCgGCGGcGGGGGGCAGGcGGCGGc- -3'
miRNA:   3'- gUGaCGUCuCCCUCUGUCU-CUGCCcu -5'
5104 3' -56.9 NC_001798.1 + 153502 0.66 0.864555
Target:  5'- aCAcCUGCGGgcGGGGAGACAcGGGGgucggaGGGGc -3'
miRNA:   3'- -GU-GACGUC--UCCCUCUGU-CUCUg-----CCCU- -5'
5104 3' -56.9 NC_001798.1 + 151806 0.69 0.726865
Target:  5'- gGCUGCuugacaaagcaacgGGGGGGAuuuagagggcgcggGGCGuGAGGCGGGAc -3'
miRNA:   3'- gUGACG--------------UCUCCCU--------------CUGU-CUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 150949 1.09 0.002451
Target:  5'- cCACUGCAGAGGGAGACAGAGACGGGAg -3'
miRNA:   3'- -GUGACGUCUCCCUCUGUCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 150533 0.66 0.849148
Target:  5'- cCugUGCGGAGgaggaGGAGACAaagGAGAgcggccCGGGGc -3'
miRNA:   3'- -GugACGUCUC-----CCUCUGU---CUCU------GCCCU- -5'
5104 3' -56.9 NC_001798.1 + 150108 0.71 0.591557
Target:  5'- gGCgGCGGAGGaaGAGGCGGAGgacgaggccGCGGGGc -3'
miRNA:   3'- gUGaCGUCUCC--CUCUGUCUC---------UGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 149949 0.66 0.886097
Target:  5'- gACcGCGGccuGGGAcGACGGAgacgccGACGGGGg -3'
miRNA:   3'- gUGaCGUCu--CCCU-CUGUCU------CUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 149818 0.67 0.841149
Target:  5'- cCGCccGCAGAGGaaGAGGCGGAGGa-GGAg -3'
miRNA:   3'- -GUGa-CGUCUCC--CUCUGUCUCUgcCCU- -5'
5104 3' -56.9 NC_001798.1 + 147604 0.69 0.70309
Target:  5'- uGCUgagGCGGcGGGGAGAgGGGGGgGGGGc -3'
miRNA:   3'- gUGA---CGUC-UCCCUCUgUCUCUgCCCU- -5'
5104 3' -56.9 NC_001798.1 + 146275 0.69 0.717008
Target:  5'- gCACcGCAGccggagaggccgagcGGGGAGugGGcggccGGGCGGGAg -3'
miRNA:   3'- -GUGaCGUC---------------UCCCUCugUC-----UCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 146071 0.66 0.886097
Target:  5'- aCACgggGgGGAGGGguccgGGGC-GAGGCGGGc -3'
miRNA:   3'- -GUGa--CgUCUCCC-----UCUGuCUCUGCCCu -5'
5104 3' -56.9 NC_001798.1 + 136787 0.7 0.652601
Target:  5'- aGCUGCGGAGGaGaAGGCAGcGGACgcgcucgaaGGGAg -3'
miRNA:   3'- gUGACGUCUCC-C-UCUGUC-UCUG---------CCCU- -5'
5104 3' -56.9 NC_001798.1 + 114483 0.72 0.571365
Target:  5'- -cCUGCucacGGGGGAGGCccuGGACGGGAc -3'
miRNA:   3'- guGACGu---CUCCCUCUGuc-UCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 101834 0.68 0.798478
Target:  5'- uCGCgGCGGGGGGAGGCGuGGGucccgGCGGcGGc -3'
miRNA:   3'- -GUGaCGUCUCCCUCUGU-CUC-----UGCC-CU- -5'
5104 3' -56.9 NC_001798.1 + 101013 0.7 0.683011
Target:  5'- gGC-GCGGAGGGGGGCGGGuuuGACGaGGc -3'
miRNA:   3'- gUGaCGUCUCCCUCUGUCU---CUGC-CCu -5'
5104 3' -56.9 NC_001798.1 + 97522 0.72 0.521736
Target:  5'- cCGCcGCGGAggagGGGGGGCGGAGGCGuGGc -3'
miRNA:   3'- -GUGaCGUCU----CCCUCUGUCUCUGC-CCu -5'
5104 3' -56.9 NC_001798.1 + 96026 0.67 0.841149
Target:  5'- aCACcgGCGGGGcGGgcGGGCGGGcGACGGGc -3'
miRNA:   3'- -GUGa-CGUCUC-CC--UCUGUCU-CUGCCCu -5'
5104 3' -56.9 NC_001798.1 + 89678 0.68 0.780309
Target:  5'- gCGCUGCGcGGGcccGGAGGCguAGuAGGCGGGGa -3'
miRNA:   3'- -GUGACGU-CUC---CCUCUG--UC-UCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 86001 0.7 0.672904
Target:  5'- gCGCUggcGCAGGGGGGuGAgcCGGAGACGuGGGc -3'
miRNA:   3'- -GUGA---CGUCUCCCU-CU--GUCUCUGC-CCU- -5'
5104 3' -56.9 NC_001798.1 + 85914 0.7 0.672904
Target:  5'- gACUGCAccGAGGGcaAGcGCGGGGGCGGaGAc -3'
miRNA:   3'- gUGACGU--CUCCC--UC-UGUCUCUGCC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.