miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5104 3' -56.9 NC_001798.1 + 150949 1.09 0.002451
Target:  5'- cCACUGCAGAGGGAGACAGAGACGGGAg -3'
miRNA:   3'- -GUGACGUCUCCCUCUGUCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 85820 0.78 0.26215
Target:  5'- --aUGaCGGGGGGGGGCGGGGGCGGGc -3'
miRNA:   3'- gugAC-GUCUCCCUCUGUCUCUGCCCu -5'
5104 3' -56.9 NC_001798.1 + 32906 0.73 0.502343
Target:  5'- ---gGCAGGGGGAgGugGGGGGgGGGAa -3'
miRNA:   3'- gugaCGUCUCCCU-CugUCUCUgCCCU- -5'
5104 3' -56.9 NC_001798.1 + 60993 0.73 0.512002
Target:  5'- uCGCagGCGGAGGG-GGCGGAuGACGcGGAc -3'
miRNA:   3'- -GUGa-CGUCUCCCuCUGUCU-CUGC-CCU- -5'
5104 3' -56.9 NC_001798.1 + 97522 0.72 0.521736
Target:  5'- cCGCcGCGGAggagGGGGGGCGGAGGCGuGGc -3'
miRNA:   3'- -GUGaCGUCU----CCCUCUGUCUCUGC-CCu -5'
5104 3' -56.9 NC_001798.1 + 33139 0.72 0.541413
Target:  5'- cCGC-GCAG-GGGGGcCGGGGAUGGGGg -3'
miRNA:   3'- -GUGaCGUCuCCCUCuGUCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 27242 0.72 0.56133
Target:  5'- gGCcGCGG-GGGAGGCGGccGCGGGAc -3'
miRNA:   3'- gUGaCGUCuCCCUCUGUCucUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 114483 0.72 0.571365
Target:  5'- -cCUGCucacGGGGGAGGCccuGGACGGGAc -3'
miRNA:   3'- guGACGu---CUCCCUCUGuc-UCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 150108 0.71 0.591557
Target:  5'- gGCgGCGGAGGaaGAGGCGGAGgacgaggccGCGGGGc -3'
miRNA:   3'- gUGaCGUCUCC--CUCUGUCUC---------UGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 27318 0.71 0.6017
Target:  5'- uGgaGgGGAGGGAGGgGGuGGCGGGGa -3'
miRNA:   3'- gUgaCgUCUCCCUCUgUCuCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 78905 0.71 0.615936
Target:  5'- -cCUGCGGAGGucccuggaggaggccGAGGCGGAGugGGa- -3'
miRNA:   3'- guGACGUCUCC---------------CUCUGUCUCugCCcu -5'
5104 3' -56.9 NC_001798.1 + 18207 0.71 0.622046
Target:  5'- gCGC-GCAGccucgccGGGGGACGGuGGGCGGGAa -3'
miRNA:   3'- -GUGaCGUCu------CCCUCUGUC-UCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 48531 0.71 0.632234
Target:  5'- gGCgagggGCgGGAGGGGcGGgAGGGGCGGGAg -3'
miRNA:   3'- gUGa----CG-UCUCCCU-CUgUCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 136787 0.7 0.652601
Target:  5'- aGCUGCGGAGGaGaAGGCAGcGGACgcgcucgaaGGGAg -3'
miRNA:   3'- gUGACGUCUCC-C-UCUGUC-UCUG---------CCCU- -5'
5104 3' -56.9 NC_001798.1 + 81277 0.7 0.672904
Target:  5'- -cUUGCGGGGGGGGAUGGcGGAuCGGGu -3'
miRNA:   3'- guGACGUCUCCCUCUGUC-UCU-GCCCu -5'
5104 3' -56.9 NC_001798.1 + 85914 0.7 0.672904
Target:  5'- gACUGCAccGAGGGcaAGcGCGGGGGCGGaGAc -3'
miRNA:   3'- gUGACGU--CUCCC--UC-UGUCUCUGCC-CU- -5'
5104 3' -56.9 NC_001798.1 + 85275 0.7 0.672904
Target:  5'- gCGCgagGCuucGGGGGGGCGGGGGcCGGGGu -3'
miRNA:   3'- -GUGa--CGuc-UCCCUCUGUCUCU-GCCCU- -5'
5104 3' -56.9 NC_001798.1 + 67699 0.7 0.672904
Target:  5'- aGCgGCGGGcccguGGGAGGCGGGGugGGcGGu -3'
miRNA:   3'- gUGaCGUCU-----CCCUCUGUCUCugCC-CU- -5'
5104 3' -56.9 NC_001798.1 + 27586 0.7 0.672904
Target:  5'- gGCUcCGGGGGaGGGACGGGGAaGGGGg -3'
miRNA:   3'- gUGAcGUCUCC-CUCUGUCUCUgCCCU- -5'
5104 3' -56.9 NC_001798.1 + 86001 0.7 0.672904
Target:  5'- gCGCUggcGCAGGGGGGuGAgcCGGAGACGuGGGc -3'
miRNA:   3'- -GUGA---CGUCUCCCU-CU--GUCUCUGC-CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.