miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5104 3' -56.9 NC_001798.1 + 101013 0.7 0.683011
Target:  5'- gGC-GCGGAGGGGGGCGGGuuuGACGaGGc -3'
miRNA:   3'- gUGaCGUCUCCCUCUGUCU---CUGC-CCu -5'
5104 3' -56.9 NC_001798.1 + 67165 0.69 0.692071
Target:  5'- gCACUcGUggccccauggaaaGGGGGGAGGaGGGGGCGGGGg -3'
miRNA:   3'- -GUGA-CG-------------UCUCCCUCUgUCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 44833 0.69 0.693075
Target:  5'- -cCUGCgaacccGGAGGGGGugGG-GugGGGGa -3'
miRNA:   3'- guGACG------UCUCCCUCugUCuCugCCCU- -5'
5104 3' -56.9 NC_001798.1 + 30026 0.69 0.693075
Target:  5'- ---gGC-GAGGGAGGCAGGGaggagcccgagaGCGGGGg -3'
miRNA:   3'- gugaCGuCUCCCUCUGUCUC------------UGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 29897 0.69 0.697088
Target:  5'- gGCUGCGGguuGGGGguggucgcgggcgguGGGCucGGGGGCGGGAc -3'
miRNA:   3'- gUGACGUC---UCCC---------------UCUG--UCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 147604 0.69 0.70309
Target:  5'- uGCUgagGCGGcGGGGAGAgGGGGGgGGGGc -3'
miRNA:   3'- gUGA---CGUC-UCCCUCUgUCUCUgCCCU- -5'
5104 3' -56.9 NC_001798.1 + 26663 0.69 0.713045
Target:  5'- gGgaGCGGGGGaGGGgGGAGAUGGGGa -3'
miRNA:   3'- gUgaCGUCUCCcUCUgUCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 146275 0.69 0.717008
Target:  5'- gCACcGCAGccggagaggccgagcGGGGAGugGGcggccGGGCGGGAg -3'
miRNA:   3'- -GUGaCGUC---------------UCCCUCugUC-----UCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 48565 0.69 0.722932
Target:  5'- gGCgggagggGCgGGAGGGGcGGgAGGGGCGGGAg -3'
miRNA:   3'- gUGa------CG-UCUCCCU-CUgUCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 48601 0.69 0.722932
Target:  5'- gGCgggagggGCgGGAGGGGcGGgAGGGGCGGGAg -3'
miRNA:   3'- gUGa------CG-UCUCCCU-CUgUCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 30950 0.69 0.722932
Target:  5'- ---gGCGGGGGGcGGGCGGgggucGGGCGGGGg -3'
miRNA:   3'- gugaCGUCUCCC-UCUGUC-----UCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 151806 0.69 0.726865
Target:  5'- gGCUGCuugacaaagcaacgGGGGGGAuuuagagggcgcggGGCGuGAGGCGGGAc -3'
miRNA:   3'- gUGACG--------------UCUCCCU--------------CUGU-CUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 27186 0.69 0.729807
Target:  5'- cCGCgggcGCGGGGGGAGGgGcgggggaagcccccGGGGCGGGGc -3'
miRNA:   3'- -GUGa---CGUCUCCCUCUgU--------------CUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 15339 0.69 0.732741
Target:  5'- gCGCgguaGCGGGGGGcgAGGCGGuGAgGGGGg -3'
miRNA:   3'- -GUGa---CGUCUCCC--UCUGUCuCUgCCCU- -5'
5104 3' -56.9 NC_001798.1 + 21519 0.69 0.746327
Target:  5'- gGCUGCAGuGGGuggauGGguccucgcgguacguACAGGGugGGGGg -3'
miRNA:   3'- gUGACGUCuCCC-----UC---------------UGUCUCugCCCU- -5'
5104 3' -56.9 NC_001798.1 + 6413 0.68 0.752092
Target:  5'- gACggGgGGAcgGGGGGACggGGGGACGGGGg -3'
miRNA:   3'- gUGa-CgUCU--CCCUCUG--UCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 6445 0.68 0.752092
Target:  5'- gACggGgGGAcgGGGGGACggGGGGACGGGGg -3'
miRNA:   3'- gUGa-CgUCU--CCCUCUG--UCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 6477 0.68 0.752092
Target:  5'- gACggGgGGAcgGGGGGACggGGGGACGGGGg -3'
miRNA:   3'- gUGa-CgUCU--CCCUCUG--UCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 6509 0.68 0.752092
Target:  5'- gACggGgGGAcgGGGGGACggGGGGACGGGGg -3'
miRNA:   3'- gUGa-CgUCU--CCCUCUG--UCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 26629 0.68 0.752092
Target:  5'- gACUGUuuGGGGAGugAcGGGGgGGGAa -3'
miRNA:   3'- gUGACGucUCCCUCugU-CUCUgCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.