Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 23518 | 0.67 | 0.838712 |
Target: 5'- aCGCcGCGGGcGGGAcccucggcgcggacGACgaGGAGGCGGGGg -3' miRNA: 3'- -GUGaCGUCU-CCCU--------------CUG--UCUCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 61155 | 0.67 | 0.832961 |
Target: 5'- gGCU-CGG-GGGAGGgGGAGGgGGGGa -3' miRNA: 3'- gUGAcGUCuCCCUCUgUCUCUgCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 32942 | 0.67 | 0.832961 |
Target: 5'- gACagGaAGuGGGGGugGGAGugGGGGg -3' miRNA: 3'- gUGa-CgUCuCCCUCugUCUCugCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 41463 | 0.67 | 0.824593 |
Target: 5'- ---cGCcGGGGGGGGCGGucGGCGGGc -3' miRNA: 3'- gugaCGuCUCCCUCUGUCu-CUGCCCu -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 34610 | 0.67 | 0.81605 |
Target: 5'- aCGCggGCAaAGGGcGGCGGcGGCGGGGg -3' miRNA: 3'- -GUGa-CGUcUCCCuCUGUCuCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 13055 | 0.67 | 0.81605 |
Target: 5'- uGC-GCAGGGGGAGAgcguacuugcaGGAGGCGcGGGc -3' miRNA: 3'- gUGaCGUCUCCCUCUg----------UCUCUGC-CCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 33415 | 0.67 | 0.807343 |
Target: 5'- gGCUcGgGGAGGGAGG-AGGGGgGGGGu -3' miRNA: 3'- gUGA-CgUCUCCCUCUgUCUCUgCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 101834 | 0.68 | 0.798478 |
Target: 5'- uCGCgGCGGGGGGAGGCGuGGGucccgGCGGcGGc -3' miRNA: 3'- -GUGaCGUCUCCCUCUGU-CUC-----UGCC-CU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 64151 | 0.68 | 0.798478 |
Target: 5'- uGCUcGCGG-GGGAGAC---GGCGGGAu -3' miRNA: 3'- gUGA-CGUCuCCCUCUGucuCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 153801 | 0.68 | 0.789464 |
Target: 5'- gGCgGCGGcGGGGGGCAGGcGGCGGc- -3' miRNA: 3'- gUGaCGUCuCCCUCUGUCU-CUGCCcu -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 89678 | 0.68 | 0.780309 |
Target: 5'- gCGCUGCGcGGGcccGGAGGCguAGuAGGCGGGGa -3' miRNA: 3'- -GUGACGU-CUC---CCUCUG--UC-UCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 5994 | 0.68 | 0.771023 |
Target: 5'- gGCUGCGcGGcGGAGACcGGGACGGc- -3' miRNA: 3'- gUGACGUcUC-CCUCUGuCUCUGCCcu -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 10295 | 0.68 | 0.761614 |
Target: 5'- gGC-GaCGGGGGGAcGACGGGGGgGGGGu -3' miRNA: 3'- gUGaC-GUCUCCCU-CUGUCUCUgCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 6232 | 0.68 | 0.761614 |
Target: 5'- gGCcgGcCGGGGGGAcgGGCgGGGGACGGGGg -3' miRNA: 3'- gUGa-C-GUCUCCCU--CUG-UCUCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 19768 | 0.68 | 0.761614 |
Target: 5'- gGCcGCAGGGauaGGGGCAGGcGGCGGGGa -3' miRNA: 3'- gUGaCGUCUCc--CUCUGUCU-CUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 26629 | 0.68 | 0.752092 |
Target: 5'- gACUGUuuGGGGAGugAcGGGGgGGGAa -3' miRNA: 3'- gUGACGucUCCCUCugU-CUCUgCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 6509 | 0.68 | 0.752092 |
Target: 5'- gACggGgGGAcgGGGGGACggGGGGACGGGGg -3' miRNA: 3'- gUGa-CgUCU--CCCUCUG--UCUCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 6477 | 0.68 | 0.752092 |
Target: 5'- gACggGgGGAcgGGGGGACggGGGGACGGGGg -3' miRNA: 3'- gUGa-CgUCU--CCCUCUG--UCUCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 6445 | 0.68 | 0.752092 |
Target: 5'- gACggGgGGAcgGGGGGACggGGGGACGGGGg -3' miRNA: 3'- gUGa-CgUCU--CCCUCUG--UCUCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 6413 | 0.68 | 0.752092 |
Target: 5'- gACggGgGGAcgGGGGGACggGGGGACGGGGg -3' miRNA: 3'- gUGa-CgUCU--CCCUCUG--UCUCUGCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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