Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5104 | 3' | -56.9 | NC_001798.1 | + | 5994 | 0.68 | 0.771023 |
Target: 5'- gGCUGCGcGGcGGAGACcGGGACGGc- -3' miRNA: 3'- gUGACGUcUC-CCUCUGuCUCUGCCcu -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 6232 | 0.68 | 0.761614 |
Target: 5'- gGCcgGcCGGGGGGAcgGGCgGGGGACGGGGg -3' miRNA: 3'- gUGa-C-GUCUCCCU--CUG-UCUCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 6413 | 0.68 | 0.752092 |
Target: 5'- gACggGgGGAcgGGGGGACggGGGGACGGGGg -3' miRNA: 3'- gUGa-CgUCU--CCCUCUG--UCUCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 6445 | 0.68 | 0.752092 |
Target: 5'- gACggGgGGAcgGGGGGACggGGGGACGGGGg -3' miRNA: 3'- gUGa-CgUCU--CCCUCUG--UCUCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 6477 | 0.68 | 0.752092 |
Target: 5'- gACggGgGGAcgGGGGGACggGGGGACGGGGg -3' miRNA: 3'- gUGa-CgUCU--CCCUCUG--UCUCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 6509 | 0.68 | 0.752092 |
Target: 5'- gACggGgGGAcgGGGGGACggGGGGACGGGGg -3' miRNA: 3'- gUGa-CgUCU--CCCUCUG--UCUCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 9666 | 0.66 | 0.886097 |
Target: 5'- gCGC-GCGGAGGGc-GCGG-GAUGGGGg -3' miRNA: 3'- -GUGaCGUCUCCCucUGUCuCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 10295 | 0.68 | 0.761614 |
Target: 5'- gGC-GaCGGGGGGAcGACGGGGGgGGGGu -3' miRNA: 3'- gUGaC-GUCUCCCU-CUGUCUCUgCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 12706 | 0.66 | 0.856952 |
Target: 5'- -gUUGCuGGGGGcGGCGGGGGCGuGGu -3' miRNA: 3'- guGACGuCUCCCuCUGUCUCUGC-CCu -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 13055 | 0.67 | 0.81605 |
Target: 5'- uGC-GCAGGGGGAGAgcguacuugcaGGAGGCGcGGGc -3' miRNA: 3'- gUGaCGUCUCCCUCUg----------UCUCUGC-CCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 15339 | 0.69 | 0.732741 |
Target: 5'- gCGCgguaGCGGGGGGcgAGGCGGuGAgGGGGg -3' miRNA: 3'- -GUGa---CGUCUCCC--UCUGUCuCUgCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 15456 | 0.66 | 0.879133 |
Target: 5'- ---gGCGGGGGGucgcguggguAGACGuGGGCGGGGg -3' miRNA: 3'- gugaCGUCUCCC----------UCUGUcUCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 18207 | 0.71 | 0.622046 |
Target: 5'- gCGC-GCAGccucgccGGGGGACGGuGGGCGGGAa -3' miRNA: 3'- -GUGaCGUCu------CCCUCUGUC-UCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 19768 | 0.68 | 0.761614 |
Target: 5'- gGCcGCAGGGauaGGGGCAGGcGGCGGGGa -3' miRNA: 3'- gUGaCGUCUCc--CUCUGUCU-CUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 21519 | 0.69 | 0.746327 |
Target: 5'- gGCUGCAGuGGGuggauGGguccucgcgguacguACAGGGugGGGGg -3' miRNA: 3'- gUGACGUCuCCC-----UC---------------UGUCUCugCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 23518 | 0.67 | 0.838712 |
Target: 5'- aCGCcGCGGGcGGGAcccucggcgcggacGACgaGGAGGCGGGGg -3' miRNA: 3'- -GUGaCGUCU-CCCU--------------CUG--UCUCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 26629 | 0.68 | 0.752092 |
Target: 5'- gACUGUuuGGGGAGugAcGGGGgGGGAa -3' miRNA: 3'- gUGACGucUCCCUCugU-CUCUgCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 26663 | 0.69 | 0.713045 |
Target: 5'- gGgaGCGGGGGaGGGgGGAGAUGGGGa -3' miRNA: 3'- gUgaCGUCUCCcUCUgUCUCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 27186 | 0.69 | 0.729807 |
Target: 5'- cCGCgggcGCGGGGGGAGGgGcgggggaagcccccGGGGCGGGGc -3' miRNA: 3'- -GUGa---CGUCUCCCUCUgU--------------CUCUGCCCU- -5' |
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5104 | 3' | -56.9 | NC_001798.1 | + | 27242 | 0.72 | 0.56133 |
Target: 5'- gGCcGCGG-GGGAGGCGGccGCGGGAc -3' miRNA: 3'- gUGaCGUCuCCCUCUGUCucUGCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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