miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5104 3' -56.9 NC_001798.1 + 5994 0.68 0.771023
Target:  5'- gGCUGCGcGGcGGAGACcGGGACGGc- -3'
miRNA:   3'- gUGACGUcUC-CCUCUGuCUCUGCCcu -5'
5104 3' -56.9 NC_001798.1 + 6232 0.68 0.761614
Target:  5'- gGCcgGcCGGGGGGAcgGGCgGGGGACGGGGg -3'
miRNA:   3'- gUGa-C-GUCUCCCU--CUG-UCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 6413 0.68 0.752092
Target:  5'- gACggGgGGAcgGGGGGACggGGGGACGGGGg -3'
miRNA:   3'- gUGa-CgUCU--CCCUCUG--UCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 6445 0.68 0.752092
Target:  5'- gACggGgGGAcgGGGGGACggGGGGACGGGGg -3'
miRNA:   3'- gUGa-CgUCU--CCCUCUG--UCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 6477 0.68 0.752092
Target:  5'- gACggGgGGAcgGGGGGACggGGGGACGGGGg -3'
miRNA:   3'- gUGa-CgUCU--CCCUCUG--UCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 6509 0.68 0.752092
Target:  5'- gACggGgGGAcgGGGGGACggGGGGACGGGGg -3'
miRNA:   3'- gUGa-CgUCU--CCCUCUG--UCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 9666 0.66 0.886097
Target:  5'- gCGC-GCGGAGGGc-GCGG-GAUGGGGg -3'
miRNA:   3'- -GUGaCGUCUCCCucUGUCuCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 10295 0.68 0.761614
Target:  5'- gGC-GaCGGGGGGAcGACGGGGGgGGGGu -3'
miRNA:   3'- gUGaC-GUCUCCCU-CUGUCUCUgCCCU- -5'
5104 3' -56.9 NC_001798.1 + 12706 0.66 0.856952
Target:  5'- -gUUGCuGGGGGcGGCGGGGGCGuGGu -3'
miRNA:   3'- guGACGuCUCCCuCUGUCUCUGC-CCu -5'
5104 3' -56.9 NC_001798.1 + 13055 0.67 0.81605
Target:  5'- uGC-GCAGGGGGAGAgcguacuugcaGGAGGCGcGGGc -3'
miRNA:   3'- gUGaCGUCUCCCUCUg----------UCUCUGC-CCU- -5'
5104 3' -56.9 NC_001798.1 + 15339 0.69 0.732741
Target:  5'- gCGCgguaGCGGGGGGcgAGGCGGuGAgGGGGg -3'
miRNA:   3'- -GUGa---CGUCUCCC--UCUGUCuCUgCCCU- -5'
5104 3' -56.9 NC_001798.1 + 15456 0.66 0.879133
Target:  5'- ---gGCGGGGGGucgcguggguAGACGuGGGCGGGGg -3'
miRNA:   3'- gugaCGUCUCCC----------UCUGUcUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 18207 0.71 0.622046
Target:  5'- gCGC-GCAGccucgccGGGGGACGGuGGGCGGGAa -3'
miRNA:   3'- -GUGaCGUCu------CCCUCUGUC-UCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 19768 0.68 0.761614
Target:  5'- gGCcGCAGGGauaGGGGCAGGcGGCGGGGa -3'
miRNA:   3'- gUGaCGUCUCc--CUCUGUCU-CUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 21519 0.69 0.746327
Target:  5'- gGCUGCAGuGGGuggauGGguccucgcgguacguACAGGGugGGGGg -3'
miRNA:   3'- gUGACGUCuCCC-----UC---------------UGUCUCugCCCU- -5'
5104 3' -56.9 NC_001798.1 + 23518 0.67 0.838712
Target:  5'- aCGCcGCGGGcGGGAcccucggcgcggacGACgaGGAGGCGGGGg -3'
miRNA:   3'- -GUGaCGUCU-CCCU--------------CUG--UCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 26629 0.68 0.752092
Target:  5'- gACUGUuuGGGGAGugAcGGGGgGGGAa -3'
miRNA:   3'- gUGACGucUCCCUCugU-CUCUgCCCU- -5'
5104 3' -56.9 NC_001798.1 + 26663 0.69 0.713045
Target:  5'- gGgaGCGGGGGaGGGgGGAGAUGGGGa -3'
miRNA:   3'- gUgaCGUCUCCcUCUgUCUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 27186 0.69 0.729807
Target:  5'- cCGCgggcGCGGGGGGAGGgGcgggggaagcccccGGGGCGGGGc -3'
miRNA:   3'- -GUGa---CGUCUCCCUCUgU--------------CUCUGCCCU- -5'
5104 3' -56.9 NC_001798.1 + 27242 0.72 0.56133
Target:  5'- gGCcGCGG-GGGAGGCGGccGCGGGAc -3'
miRNA:   3'- gUGaCGUCuCCCUCUGUCucUGCCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.