miRNA display CGI


Results 61 - 80 of 474 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5104 5' -68.6 NC_001798.1 + 21314 0.78 0.056673
Target:  5'- -cCCCGGCCCCCcggcccCCCGGCCCCCcgGCCc -3'
miRNA:   3'- acGGGCUGGGGGc-----GGGCUGGGGG--CGG- -5'
5104 5' -68.6 NC_001798.1 + 21350 0.8 0.041103
Target:  5'- gGCCCGuCCCCCcgGCCCGuCCCCCcgGCCc -3'
miRNA:   3'- aCGGGCuGGGGG--CGGGCuGGGGG--CGG- -5'
5104 5' -68.6 NC_001798.1 + 21389 0.8 0.041103
Target:  5'- gGCCCGuCCCCCcgGCCCGuCCCCCcgGCCc -3'
miRNA:   3'- aCGGGCuGGGGG--CGGGCuGGGGG--CGG- -5'
5104 5' -68.6 NC_001798.1 + 21428 0.75 0.099208
Target:  5'- gGCCCGuCCCCCcgGCCCGuCCCCCc-- -3'
miRNA:   3'- aCGGGCuGGGGG--CGGGCuGGGGGcgg -5'
5104 5' -68.6 NC_001798.1 + 21454 0.84 0.023164
Target:  5'- gGCCCGuccccccguCCCCCGCCCGuCCCCCcgGCCg -3'
miRNA:   3'- aCGGGCu--------GGGGGCGGGCuGGGGG--CGG- -5'
5104 5' -68.6 NC_001798.1 + 21641 0.68 0.284719
Target:  5'- cGUCgGugCCCCGCUCG-CCgCCGgCg -3'
miRNA:   3'- aCGGgCugGGGGCGGGCuGGgGGCgG- -5'
5104 5' -68.6 NC_001798.1 + 21695 0.68 0.309829
Target:  5'- aUGCCgCcGCUgCCGuCCCGGUCUCCGCCg -3'
miRNA:   3'- -ACGG-GcUGGgGGC-GGGCUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 21789 0.8 0.045385
Target:  5'- gGCCCGcCCCCCGUCCGGgC-CCGCCu -3'
miRNA:   3'- aCGGGCuGGGGGCGGGCUgGgGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 22078 0.66 0.385089
Target:  5'- gGCCCcGCCCCCuuuggggcggagccGCCCGcggaccaacgggGCgaCCUCGCCg -3'
miRNA:   3'- aCGGGcUGGGGG--------------CGGGC------------UG--GGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 22615 0.66 0.395019
Target:  5'- cUGCCaaccACCCCC-CCCcACUgCCGCCc -3'
miRNA:   3'- -ACGGgc--UGGGGGcGGGcUGGgGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 22847 0.69 0.25011
Target:  5'- cGCCC-ACCCCgaaCCCGGaccgucgCCCCGCCg -3'
miRNA:   3'- aCGGGcUGGGGgc-GGGCUg------GGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 23117 0.7 0.214202
Target:  5'- gGCCCGcucGCCUucuCCGCCgCgGACCCCCuCCa -3'
miRNA:   3'- aCGGGC---UGGG---GGCGG-G-CUGGGGGcGG- -5'
5104 5' -68.6 NC_001798.1 + 23293 0.73 0.13518
Target:  5'- cGCCgCGACCCCCGgCg---CCCCGCCg -3'
miRNA:   3'- aCGG-GCUGGGGGCgGgcugGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 23347 0.69 0.266961
Target:  5'- gGCgCGcCCCCCGCCgGcGCUCggCCGCCu -3'
miRNA:   3'- aCGgGCuGGGGGCGGgC-UGGG--GGCGG- -5'
5104 5' -68.6 NC_001798.1 + 23404 0.66 0.372354
Target:  5'- cGUCgGcguCCUCCGCCUccuCCUCCGCCu -3'
miRNA:   3'- aCGGgCu--GGGGGCGGGcu-GGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 23489 0.76 0.083784
Target:  5'- cGCCCGcGCCCCCGCCagcgccgcaGACCa-CGCCg -3'
miRNA:   3'- aCGGGC-UGGGGGCGGg--------CUGGggGCGG- -5'
5104 5' -68.6 NC_001798.1 + 23562 0.72 0.151977
Target:  5'- gUGCCCGcgaggGCCCCgggggcggCGcCCCGGCCgagCCCGCCc -3'
miRNA:   3'- -ACGGGC-----UGGGG--------GC-GGGCUGG---GGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 23614 0.86 0.01512
Target:  5'- aGCCCG-CCCCgGCCCgGACCCCCGCg -3'
miRNA:   3'- aCGGGCuGGGGgCGGG-CUGGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 23652 0.68 0.290843
Target:  5'- cGCCUGGagCgCCGCCgGGCCCgCGCg -3'
miRNA:   3'- aCGGGCUg-GgGGCGGgCUGGGgGCGg -5'
5104 5' -68.6 NC_001798.1 + 23803 0.71 0.200216
Target:  5'- aGCCgUGGCCCggGgCCGGcCCCCCGCCc -3'
miRNA:   3'- aCGG-GCUGGGggCgGGCU-GGGGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.