miRNA display CGI


Results 41 - 60 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5104 5' -68.6 NC_001798.1 + 9020 0.68 0.290843
Target:  5'- gGCCCcgaGACCCaCCGCCC--CCCgCaGCCa -3'
miRNA:   3'- aCGGG---CUGGG-GGCGGGcuGGGgG-CGG- -5'
5104 5' -68.6 NC_001798.1 + 9543 0.73 0.13518
Target:  5'- gGCCCGGCUuuuaaCCGCCCGccaggagcGCCUgCGCCa -3'
miRNA:   3'- aCGGGCUGGg----GGCGGGC--------UGGGgGCGG- -5'
5104 5' -68.6 NC_001798.1 + 11043 0.71 0.187032
Target:  5'- -cCCCGGgCCCCGCCCauCCauuaCCCGCCu -3'
miRNA:   3'- acGGGCUgGGGGCGGGcuGG----GGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 13371 0.68 0.290843
Target:  5'- gUGCUuuCGGgCCUCGUCCGAagCCCCGCg -3'
miRNA:   3'- -ACGG--GCUgGGGGCGGGCUg-GGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 14808 0.75 0.096851
Target:  5'- cGCCUG-CgCCCCGCCCGGCCg-CGCCa -3'
miRNA:   3'- aCGGGCuG-GGGGCGGGCUGGggGCGG- -5'
5104 5' -68.6 NC_001798.1 + 15550 0.73 0.13518
Target:  5'- gUGCCCGGCCCCgGgCguuGCCgCCGCCg -3'
miRNA:   3'- -ACGGGCUGGGGgCgGgc-UGGgGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 16779 0.67 0.357743
Target:  5'- -aCCCGACCCgCCGCgUG-UCCCCGg- -3'
miRNA:   3'- acGGGCUGGG-GGCGgGCuGGGGGCgg -5'
5104 5' -68.6 NC_001798.1 + 18996 0.69 0.266961
Target:  5'- aUGCCCcugcguguuuucGGCUCCUGCaucaagagcgccCCGGCCCCCaCCg -3'
miRNA:   3'- -ACGGG------------CUGGGGGCG------------GGCUGGGGGcGG- -5'
5104 5' -68.6 NC_001798.1 + 19171 0.67 0.33659
Target:  5'- -aCCgUGGCCCCUGCCCGAUCgguuUuuGCCc -3'
miRNA:   3'- acGG-GCUGGGGGCGGGCUGG----GggCGG- -5'
5104 5' -68.6 NC_001798.1 + 19364 0.67 0.322335
Target:  5'- cGCCCcGCaucauCCCGCCCGcauccggcgacccACCCCaCGCa -3'
miRNA:   3'- aCGGGcUGg----GGGCGGGC-------------UGGGG-GCGg -5'
5104 5' -68.6 NC_001798.1 + 19476 0.7 0.234146
Target:  5'- ---aUGACCCCCagaacCCCgGGCCCCCGCUg -3'
miRNA:   3'- acggGCUGGGGGc----GGG-CUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 19972 0.67 0.325688
Target:  5'- aGCCgCGAUagCCCCGCCgGACgcggauuccggguucUCCCgGCCg -3'
miRNA:   3'- aCGG-GCUG--GGGGCGGgCUG---------------GGGG-CGG- -5'
5104 5' -68.6 NC_001798.1 + 20688 0.66 0.37981
Target:  5'- cGUCCGACggCCCCGUucccuCCGAuuccgUCCCCGUg -3'
miRNA:   3'- aCGGGCUG--GGGGCG-----GGCU-----GGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 20778 0.7 0.209449
Target:  5'- aGCgaCGGCgCCCGCCgCGuagguCUCCCGCCu -3'
miRNA:   3'- aCGg-GCUGgGGGCGG-GCu----GGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 21093 0.79 0.05395
Target:  5'- gGCCCGuCCCCCcguccccccgGCCCGucCCCCCGUCc -3'
miRNA:   3'- aCGGGCuGGGGG----------CGGGCu-GGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 21135 0.79 0.05395
Target:  5'- gGCCCGuCCCCCcguccccccgGCCCGucCCCCCGUCc -3'
miRNA:   3'- aCGGGCuGGGGG----------CGGGCu-GGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 21177 0.77 0.072408
Target:  5'- gGCCCGucCCCCCGucccCCCGucCCCCCGUCc -3'
miRNA:   3'- aCGGGCu-GGGGGC----GGGCu-GGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 21210 0.7 0.204788
Target:  5'- -cCCCGucCCCCCGucccCCCGucCCCCCGUCc -3'
miRNA:   3'- acGGGCu-GGGGGC----GGGCu-GGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 21242 0.7 0.204788
Target:  5'- -cCCCGucCCCCCGucccCCCGucCCCCCGUCc -3'
miRNA:   3'- acGGGCu-GGGGGC----GGGCu-GGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 21274 0.7 0.204788
Target:  5'- -cCCCGucCCCCCGucccCCCGucCCCCCGUCc -3'
miRNA:   3'- acGGGCu-GGGGGC----GGGCu-GGGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.