miRNA display CGI


Results 41 - 60 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5104 5' -68.6 NC_001798.1 + 147051 0.7 0.223986
Target:  5'- cGCCCcggccggaggGGCCCCCGCaccucggcggCCG-CCCCCuCCg -3'
miRNA:   3'- aCGGG----------CUGGGGGCG----------GGCuGGGGGcGG- -5'
5104 5' -68.6 NC_001798.1 + 146995 0.67 0.357743
Target:  5'- gGUCCGcCUCuuGCCUcgggGACCCCCgggcggGCCg -3'
miRNA:   3'- aCGGGCuGGGggCGGG----CUGGGGG------CGG- -5'
5104 5' -68.6 NC_001798.1 + 146735 0.75 0.10162
Target:  5'- gUGCCCGgagauccauuaaGCCgCCggagaGCCCGAgCCCCGCCc -3'
miRNA:   3'- -ACGGGC------------UGGgGG-----CGGGCUgGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 146625 0.77 0.07584
Target:  5'- cGCCgcauuaGGCCCCCGCgggcauccggcggCCGGCCCCaCGCCc -3'
miRNA:   3'- aCGGg-----CUGGGGGCG-------------GGCUGGGG-GCGG- -5'
5104 5' -68.6 NC_001798.1 + 146500 0.66 0.372354
Target:  5'- gGgCCGGCaacgCCCCGCgCCGGCCgCgGCg -3'
miRNA:   3'- aCgGGCUG----GGGGCG-GGCUGGgGgCGg -5'
5104 5' -68.6 NC_001798.1 + 146217 0.73 0.134863
Target:  5'- -cUCCGGCCCuCCGCgagucCCGAcgcccccCCCCCGCCg -3'
miRNA:   3'- acGGGCUGGG-GGCG-----GGCU-------GGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 146179 0.67 0.33659
Target:  5'- aGuCCCGAUCCuCCuCCUGcauCCCCuCGCCu -3'
miRNA:   3'- aC-GGGCUGGG-GGcGGGCu--GGGG-GCGG- -5'
5104 5' -68.6 NC_001798.1 + 145979 0.72 0.170646
Target:  5'- cGCCCGcaGCCUCCGgcagcacgCCGACCaCCGCCg -3'
miRNA:   3'- aCGGGC--UGGGGGCg-------GGCUGGgGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 145938 0.78 0.058084
Target:  5'- aGCCgGGCCCCC-CCCcACCaCCCGCCc -3'
miRNA:   3'- aCGGgCUGGGGGcGGGcUGG-GGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 145893 0.7 0.214202
Target:  5'- -cCCCGACCgCCGCCgCGcCCCaCCGgCg -3'
miRNA:   3'- acGGGCUGGgGGCGG-GCuGGG-GGCgG- -5'
5104 5' -68.6 NC_001798.1 + 145749 0.66 0.410617
Target:  5'- cGCCacACCCaCgGCaCCccCCCCCGCCg -3'
miRNA:   3'- aCGGgcUGGG-GgCG-GGcuGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 145723 0.84 0.01993
Target:  5'- aGcCCCGGCCCCgGCCCG-CgCCCCGCCg -3'
miRNA:   3'- aC-GGGCUGGGGgCGGGCuG-GGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 145609 0.75 0.104087
Target:  5'- cGCCgCGACcccgaCCCCGCCCcACcgCCCCGCCc -3'
miRNA:   3'- aCGG-GCUG-----GGGGCGGGcUG--GGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 145523 0.88 0.010365
Target:  5'- cGCCCGgccgccgcgcGCCCCCGCCCGGCCgCCCGCg -3'
miRNA:   3'- aCGGGC----------UGGGGGCGGGCUGG-GGGCGg -5'
5104 5' -68.6 NC_001798.1 + 145468 0.86 0.014745
Target:  5'- cGCCgCGcGCCCCCGCCCGgccgccgcgcGCCCCCGCCc -3'
miRNA:   3'- aCGG-GC-UGGGGGCGGGC----------UGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 145418 0.88 0.010901
Target:  5'- cGCCCGgccgccgcgcGCCCCCGCCCGgccgccgcgcGCCCCCGCCc -3'
miRNA:   3'- aCGGGC----------UGGGGGCGGGC----------UGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 145106 0.66 0.418558
Target:  5'- uUGCCUGugacccACCCCaCGCCCcccaGGCUCCCauaacgacaaGCCc -3'
miRNA:   3'- -ACGGGC------UGGGG-GCGGG----CUGGGGG----------CGG- -5'
5104 5' -68.6 NC_001798.1 + 144528 0.67 0.357743
Target:  5'- gGCgCCGACCUCgCGUCgGGgagaCCCGCCg -3'
miRNA:   3'- aCG-GGCUGGGG-GCGGgCUgg--GGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 143824 0.68 0.297068
Target:  5'- cGCgCGGCCagCCGUUgGACcaCCCCGCCc -3'
miRNA:   3'- aCGgGCUGGg-GGCGGgCUG--GGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 143361 0.67 0.364998
Target:  5'- gGUCCGGCuCUCCGUCgagaGGCCCCaCGUg -3'
miRNA:   3'- aCGGGCUG-GGGGCGGg---CUGGGG-GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.