miRNA display CGI


Results 21 - 40 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5104 5' -68.6 NC_001798.1 + 151021 1.08 0.000316
Target:  5'- cGCCCGACCCCCGCCCGACCCCCGCCc -3'
miRNA:   3'- aCGGGCUGGGGGCGGGCUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 150987 1.09 0.000293
Target:  5'- gUGCCCGACCCCCGCCCGACCCCCGCCc -3'
miRNA:   3'- -ACGGGCUGGGGGCGGGCUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 150886 0.74 0.125939
Target:  5'- gGgUCG-CCCCCGCaCCGccGCCCCCGCg -3'
miRNA:   3'- aCgGGCuGGGGGCG-GGC--UGGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 150791 0.72 0.155556
Target:  5'- -uCCC-ACCCCCGCCCGcaacggggcGCCgCCGCUg -3'
miRNA:   3'- acGGGcUGGGGGCGGGC---------UGGgGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 150689 0.73 0.132033
Target:  5'- cGCCC-ACCCgCgCGCCUGcgcgcgcCCCCCGCCg -3'
miRNA:   3'- aCGGGcUGGG-G-GCGGGCu------GGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 150254 0.77 0.067292
Target:  5'- cGCCCGGCCCU--CCCGACCCgCGCg -3'
miRNA:   3'- aCGGGCUGGGGgcGGGCUGGGgGCGg -5'
5104 5' -68.6 NC_001798.1 + 150149 0.76 0.090093
Target:  5'- aGUCCGACCCgCGCCUcuuccgggggcgGGCCgCCGCCc -3'
miRNA:   3'- aCGGGCUGGGgGCGGG------------CUGGgGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 150048 0.71 0.195734
Target:  5'- gGCCCGGCgCggcgCCGCCCucuuGGCCCCCaCCc -3'
miRNA:   3'- aCGGGCUGgG----GGCGGG----CUGGGGGcGG- -5'
5104 5' -68.6 NC_001798.1 + 149614 0.69 0.266961
Target:  5'- gGCCaCGACgCUCGa--GACCCCCGCg -3'
miRNA:   3'- aCGG-GCUGgGGGCgggCUGGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 149479 0.71 0.195734
Target:  5'- gGCCgCGGCCCgcagcagguCCGCCaCGuuCCCCGUCu -3'
miRNA:   3'- aCGG-GCUGGG---------GGCGG-GCugGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 148867 0.67 0.364998
Target:  5'- gUGCCCGcCCCCCcuccuccuccuCCCuuCCCCC-CCa -3'
miRNA:   3'- -ACGGGCuGGGGGc----------GGGcuGGGGGcGG- -5'
5104 5' -68.6 NC_001798.1 + 148652 0.68 0.278698
Target:  5'- cGCCCucccACUCCUGCCCaccACCCCCagggucugGCCg -3'
miRNA:   3'- aCGGGc---UGGGGGCGGGc--UGGGGG--------CGG- -5'
5104 5' -68.6 NC_001798.1 + 148544 0.72 0.174618
Target:  5'- cGCCCucGCCCCCGCCCcacuuUCCCC-CCu -3'
miRNA:   3'- aCGGGc-UGGGGGCGGGcu---GGGGGcGG- -5'
5104 5' -68.6 NC_001798.1 + 148227 0.67 0.35059
Target:  5'- cGCgCGAgccCCCUCGcCCCGAugggagucUCCCCGCa -3'
miRNA:   3'- aCGgGCU---GGGGGC-GGGCU--------GGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 147991 0.68 0.278698
Target:  5'- gUGCCCGGCCacagCCguggguguggCGCCCGuCCCCUuCCu -3'
miRNA:   3'- -ACGGGCUGG----GG----------GCGGGCuGGGGGcGG- -5'
5104 5' -68.6 NC_001798.1 + 147931 0.69 0.253409
Target:  5'- gGCCCGuacGCCCaCCGCCCccacgcgccggucACCCCCcCCc -3'
miRNA:   3'- aCGGGC---UGGG-GGCGGGc------------UGGGGGcGG- -5'
5104 5' -68.6 NC_001798.1 + 147874 0.67 0.33659
Target:  5'- -aCCC-ACCCCCGuuucCCCccCCCCCGUCg -3'
miRNA:   3'- acGGGcUGGGGGC----GGGcuGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 147399 0.67 0.363539
Target:  5'- cGCUCuccucacauuuCCCCC-CCCccCCCCCGCCg -3'
miRNA:   3'- aCGGGcu---------GGGGGcGGGcuGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 147304 0.84 0.022032
Target:  5'- cGCCCcGCUCCCggGCCCGACCCUCGCCc -3'
miRNA:   3'- aCGGGcUGGGGG--CGGGCUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 147202 0.78 0.062524
Target:  5'- cGCCCGGCggUCCgGCCCgGGCCCCCGgCg -3'
miRNA:   3'- aCGGGCUG--GGGgCGGG-CUGGGGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.