miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5104 5' -68.6 NC_001798.1 + 154545 0.72 0.151977
Target:  5'- cGCgCGGCuuuuuuCCCgCGCCCG-CCCCCGCg -3'
miRNA:   3'- aCGgGCUG------GGG-GCGGGCuGGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 154477 0.66 0.410617
Target:  5'- cGgCCGcuCCCCCGCgggcgCCGccccucCCCCCGCg -3'
miRNA:   3'- aCgGGCu-GGGGGCG-----GGCu-----GGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 154448 0.69 0.23937
Target:  5'- cGCCCccuUCCCCGUCCcuCCCCCggaGCCg -3'
miRNA:   3'- aCGGGcu-GGGGGCGGGcuGGGGG---CGG- -5'
5104 5' -68.6 NC_001798.1 + 153836 0.67 0.33659
Target:  5'- gUGCggGGCCUCCggcGCCUucCCCCCGCCc -3'
miRNA:   3'- -ACGggCUGGGGG---CGGGcuGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 153410 0.75 0.099208
Target:  5'- gGCCCG-CUCgCgCGCCCagGACCCCCGUCg -3'
miRNA:   3'- aCGGGCuGGG-G-GCGGG--CUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 153357 0.75 0.096851
Target:  5'- gGUCCGAUgaCCGCCuCGGCCgCCGCCa -3'
miRNA:   3'- aCGGGCUGggGGCGG-GCUGGgGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 153235 0.7 0.209449
Target:  5'- gGCCCgcggcggcggagGACCCgCGCgCCG-CCgCCGCCg -3'
miRNA:   3'- aCGGG------------CUGGGgGCG-GGCuGGgGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 153170 0.66 0.387366
Target:  5'- aGCuCCgGGgCUCCGCCgGccgaggccGCCCUCGCCg -3'
miRNA:   3'- aCG-GG-CUgGGGGCGGgC--------UGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 152640 0.72 0.155556
Target:  5'- -cCCCGGCgCCCCGCCggcgCGGCCcugaguggugCCCGCCc -3'
miRNA:   3'- acGGGCUG-GGGGCGG----GCUGG----------GGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 152380 0.67 0.35059
Target:  5'- cGCCgGGCCgCCGCuCCGuCgCUCGCa -3'
miRNA:   3'- aCGGgCUGGgGGCG-GGCuGgGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 152124 0.73 0.138397
Target:  5'- cGCCCccgaGCCCaCCGCCCGcgaccACCCCCaacccgcaGCCg -3'
miRNA:   3'- aCGGGc---UGGG-GGCGGGC-----UGGGGG--------CGG- -5'
5104 5' -68.6 NC_001798.1 + 151976 0.69 0.244691
Target:  5'- -uUCCGACCCCuCGucucccccCCUGuCCCCCGCUc -3'
miRNA:   3'- acGGGCUGGGG-GC--------GGGCuGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 151865 0.76 0.087305
Target:  5'- cGCgCCGuguCCCCCGugucccucccucacCCCGGcCCCCCGCCc -3'
miRNA:   3'- aCG-GGCu--GGGGGC--------------GGGCU-GGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 151649 0.66 0.40277
Target:  5'- gGCCCGccucgaacAUCUCCGUguCCGugCugCCCGCCu -3'
miRNA:   3'- aCGGGC--------UGGGGGCG--GGCugG--GGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 151555 0.66 0.40277
Target:  5'- gGCCC-ACCCCCaCagGAUCCCUGCg -3'
miRNA:   3'- aCGGGcUGGGGGcGggCUGGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 151517 0.67 0.364998
Target:  5'- cGCCC--CCCCCuCCCG-CUUCCGCUu -3'
miRNA:   3'- aCGGGcuGGGGGcGGGCuGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 151269 0.66 0.40277
Target:  5'- cGUgCCGGCCCgcacggCCGCCuCGGCCuCCaCGCg -3'
miRNA:   3'- aCG-GGCUGGG------GGCGG-GCUGG-GG-GCGg -5'
5104 5' -68.6 NC_001798.1 + 151111 0.78 0.058084
Target:  5'- --nCCGACCCCCGCCCG-CCCucaCCGUCg -3'
miRNA:   3'- acgGGCUGGGGGCGGGCuGGG---GGCGG- -5'
5104 5' -68.6 NC_001798.1 + 151087 1.02 0.001012
Target:  5'- cGCCCGACCCCCGCCCGcCCCCCGCCc -3'
miRNA:   3'- aCGGGCUGGGGGCGGGCuGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 151054 1.08 0.000316
Target:  5'- cGCCCGACCCCCGCCCGACCCCCGCCc -3'
miRNA:   3'- aCGGGCUGGGGGCGGGCUGGGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.