miRNA display CGI


Results 21 - 40 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5104 5' -68.6 NC_001798.1 + 33620 0.82 0.02901
Target:  5'- gUGCCC-ACCCCCGcCCCGGCgcccaCCCCGCCc -3'
miRNA:   3'- -ACGGGcUGGGGGC-GGGCUG-----GGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 34128 0.82 0.030494
Target:  5'- gGCCCGACCCgCGCCUG-CCCCC-CCg -3'
miRNA:   3'- aCGGGCUGGGgGCGGGCuGGGGGcGG- -5'
5104 5' -68.6 NC_001798.1 + 28231 0.82 0.032053
Target:  5'- cGCCUG-CCgCCGCCUGcCCCCCGCCg -3'
miRNA:   3'- aCGGGCuGGgGGCGGGCuGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 27623 0.81 0.033691
Target:  5'- cUGCCCuGCCgCCCGCCCG-CCgCCGCCg -3'
miRNA:   3'- -ACGGGcUGG-GGGCGGGCuGGgGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 128761 0.81 0.033691
Target:  5'- -aCCUGGCCCCCGCCCcccaGACCCCCcugGCCu -3'
miRNA:   3'- acGGGCUGGGGGCGGG----CUGGGGG---CGG- -5'
5104 5' -68.6 NC_001798.1 + 21350 0.8 0.041103
Target:  5'- gGCCCGuCCCCCcgGCCCGuCCCCCcgGCCc -3'
miRNA:   3'- aCGGGCuGGGGG--CGGGCuGGGGG--CGG- -5'
5104 5' -68.6 NC_001798.1 + 21389 0.8 0.041103
Target:  5'- gGCCCGuCCCCCcgGCCCGuCCCCCcgGCCc -3'
miRNA:   3'- aCGGGCuGGGGG--CGGGCuGGGGG--CGG- -5'
5104 5' -68.6 NC_001798.1 + 87727 0.8 0.043192
Target:  5'- aGCgCCGGCCCCCgccgGCCCGAaCCCCGCg -3'
miRNA:   3'- aCG-GGCUGGGGG----CGGGCUgGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 21789 0.8 0.045385
Target:  5'- gGCCCGcCCCCCGUCCGGgC-CCGCCu -3'
miRNA:   3'- aCGGGCuGGGGGCGGGCUgGgGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 3132 0.8 0.045385
Target:  5'- gGCCCG-CCUCCGCgcgCCGGCCgCCGCCa -3'
miRNA:   3'- aCGGGCuGGGGGCG---GGCUGGgGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 86832 0.8 0.045385
Target:  5'- cGCuCCGGCUCCCgGCCCGGgCCCgGCCg -3'
miRNA:   3'- aCG-GGCUGGGGG-CGGGCUgGGGgCGG- -5'
5104 5' -68.6 NC_001798.1 + 111735 0.8 0.045385
Target:  5'- cGCuuGGCCCCCGCgcccCCGGCCCCgGUCc -3'
miRNA:   3'- aCGggCUGGGGGCG----GGCUGGGGgCGG- -5'
5104 5' -68.6 NC_001798.1 + 54469 0.79 0.047687
Target:  5'- gGCUCG-CCCCCaCUCGACCCCCGCg -3'
miRNA:   3'- aCGGGCuGGGGGcGGGCUGGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 33960 0.79 0.047687
Target:  5'- gGcCCCGGCCCCCgGCCCGuuuCCuUCCGCCa -3'
miRNA:   3'- aC-GGGCUGGGGG-CGGGCu--GG-GGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 82533 0.79 0.050102
Target:  5'- cUGCCCcagccGCCCCUGCCCcagccGCCCCUGCCg -3'
miRNA:   3'- -ACGGGc----UGGGGGCGGGc----UGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 5547 0.79 0.051354
Target:  5'- aUG-CCGGCCCCgCGCUCccguuGGCCCCCGCCg -3'
miRNA:   3'- -ACgGGCUGGGG-GCGGG-----CUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 48401 0.79 0.051354
Target:  5'- cGCaCgGGCCCCCGCCCGcucggcuucccGUCCCCGCCg -3'
miRNA:   3'- aCG-GgCUGGGGGCGGGC-----------UGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 108473 0.79 0.051863
Target:  5'- cUGCCCGAgcUCCCCGaggcggggcccacguCCCGucCCCCCGCCg -3'
miRNA:   3'- -ACGGGCU--GGGGGC---------------GGGCu-GGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 98676 0.79 0.052637
Target:  5'- cGgCCGcCCCCCGuCCCGAgCCCCGCg -3'
miRNA:   3'- aCgGGCuGGGGGC-GGGCUgGGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 21093 0.79 0.05395
Target:  5'- gGCCCGuCCCCCcguccccccgGCCCGucCCCCCGUCc -3'
miRNA:   3'- aCGGGCuGGGGG----------CGGGCu-GGGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.