miRNA display CGI


Results 21 - 40 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5104 5' -68.6 NC_001798.1 + 2103 0.77 0.072408
Target:  5'- gGCCCG-CCCCCGgCgCGGCCCgCgGCCa -3'
miRNA:   3'- aCGGGCuGGGGGCgG-GCUGGG-GgCGG- -5'
5104 5' -68.6 NC_001798.1 + 3026 0.68 0.284719
Target:  5'- gGCCgGGCUCCgGCCa-GCCCCgGCa -3'
miRNA:   3'- aCGGgCUGGGGgCGGgcUGGGGgCGg -5'
5104 5' -68.6 NC_001798.1 + 3132 0.8 0.045385
Target:  5'- gGCCCG-CCUCCGCgcgCCGGCCgCCGCCa -3'
miRNA:   3'- aCGGGCuGGGGGCG---GGCUGGgGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 3526 0.75 0.10661
Target:  5'- cGCCaGGCCCCaGCCgaagCGGCCCgCCGCCa -3'
miRNA:   3'- aCGGgCUGGGGgCGG----GCUGGG-GGCGG- -5'
5104 5' -68.6 NC_001798.1 + 3814 0.72 0.162944
Target:  5'- gGCCCGcgccuCCUCCGCCuCGggcGCCCCCcagagGCCg -3'
miRNA:   3'- aCGGGCu----GGGGGCGG-GC---UGGGGG-----CGG- -5'
5104 5' -68.6 NC_001798.1 + 3902 0.75 0.10661
Target:  5'- gGgCCGGCCCCgGgCCaCGGCuCCCCGCUg -3'
miRNA:   3'- aCgGGCUGGGGgC-GG-GCUG-GGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 4003 0.73 0.145042
Target:  5'- cGCCCGGCCgugaagcggCCCGUggcgucgcggCCGGCCaCCGCCg -3'
miRNA:   3'- aCGGGCUGG---------GGGCG----------GGCUGGgGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 4140 0.75 0.096851
Target:  5'- cGCCCccggGGCCCUCGCggGcACCCCCGCCu -3'
miRNA:   3'- aCGGG----CUGGGGGCGggC-UGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 4932 0.72 0.169471
Target:  5'- gGCCCGGagacguCCCCCGUCCucguccgccaucgcGACCUCgGCCc -3'
miRNA:   3'- aCGGGCU------GGGGGCGGG--------------CUGGGGgCGG- -5'
5104 5' -68.6 NC_001798.1 + 5353 0.75 0.104087
Target:  5'- aUGCgCGGCCCCgC-CCCGACgCCCGCg -3'
miRNA:   3'- -ACGgGCUGGGG-GcGGGCUGgGGGCGg -5'
5104 5' -68.6 NC_001798.1 + 5399 0.66 0.372354
Target:  5'- gGCCCGuuggucgcgccGCCgCCGCUCcGCCCgCGCg -3'
miRNA:   3'- aCGGGC-----------UGGgGGCGGGcUGGGgGCGg -5'
5104 5' -68.6 NC_001798.1 + 5448 0.71 0.188315
Target:  5'- cGCCCGgcgcgggcggcuuccGCUUCCGCCCgcgaugcuaaugaGACCCUCGUCg -3'
miRNA:   3'- aCGGGC---------------UGGGGGCGGG-------------CUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 5547 0.79 0.051354
Target:  5'- aUG-CCGGCCCCgCGCUCccguuGGCCCCCGCCg -3'
miRNA:   3'- -ACgGGCUGGGG-GCGGG-----CUGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 5724 0.73 0.148472
Target:  5'- aGCgCUGGCgCCCUGCCCGggGCCCgCGUCa -3'
miRNA:   3'- aCG-GGCUG-GGGGCGGGC--UGGGgGCGG- -5'
5104 5' -68.6 NC_001798.1 + 5862 0.73 0.148472
Target:  5'- aGCaCUGGCgCCCUGCCCGggGCCCgCGUCa -3'
miRNA:   3'- aCG-GGCUG-GGGGCGGGC--UGGGgGCGG- -5'
5104 5' -68.6 NC_001798.1 + 7415 0.66 0.37981
Target:  5'- -cCCgCGACCCCCa--CGACCCCCacggguGCCc -3'
miRNA:   3'- acGG-GCUGGGGGcggGCUGGGGG------CGG- -5'
5104 5' -68.6 NC_001798.1 + 7495 0.75 0.107635
Target:  5'- aGCCCGGuCCCCUacgccccccucggcaGCCCgGACCCCucauCGCCg -3'
miRNA:   3'- aCGGGCU-GGGGG---------------CGGG-CUGGGG----GCGG- -5'
5104 5' -68.6 NC_001798.1 + 7635 0.66 0.372354
Target:  5'- cGCggaCCGGCCCCCGgaguccCCCGGCUCCgaGUUg -3'
miRNA:   3'- aCG---GGCUGGGGGC------GGGCUGGGGg-CGG- -5'
5104 5' -68.6 NC_001798.1 + 7759 0.66 0.410617
Target:  5'- cGCCUGugugcucucaacACCCaCGaCCCaccGCCCCCGCUg -3'
miRNA:   3'- aCGGGC------------UGGGgGC-GGGc--UGGGGGCGG- -5'
5104 5' -68.6 NC_001798.1 + 8676 0.69 0.261244
Target:  5'- aGCCCGACgCaCCGCgUGcGCCgCCGUCg -3'
miRNA:   3'- aCGGGCUGgG-GGCGgGC-UGGgGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.