miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5105 3' -57.3 NC_001798.1 + 19899 0.71 0.539755
Target:  5'- aCCACCgcggacaGCCAGGGCuGGGAGCCc--- -3'
miRNA:   3'- -GGUGGg------UGGUUCUGuCCCUCGGucuu -5'
5105 3' -57.3 NC_001798.1 + 25233 0.66 0.824221
Target:  5'- cCgGCCCGCCGAGggccccgacccGCAGGGcGGCUGGc- -3'
miRNA:   3'- -GgUGGGUGGUUC-----------UGUCCC-UCGGUCuu -5'
5105 3' -57.3 NC_001798.1 + 26568 0.66 0.848901
Target:  5'- gCCACgCCGCCGAGGC-GcGAGCCcguGGAc -3'
miRNA:   3'- -GGUG-GGUGGUUCUGuCcCUCGG---UCUu -5'
5105 3' -57.3 NC_001798.1 + 27214 0.69 0.671769
Target:  5'- -aGCCC-CCGGGGCGGGGcGCgGGGGa -3'
miRNA:   3'- ggUGGGuGGUUCUGUCCCuCGgUCUU- -5'
5105 3' -57.3 NC_001798.1 + 27781 0.66 0.832632
Target:  5'- aCGCCaGCCGGGACGGGuGAguucGCUAGGc -3'
miRNA:   3'- gGUGGgUGGUUCUGUCC-CU----CGGUCUu -5'
5105 3' -57.3 NC_001798.1 + 28183 0.66 0.824221
Target:  5'- gCCcCCCgaGCgAGGGCGGGGGgaaggcGCCGGAGg -3'
miRNA:   3'- -GGuGGG--UGgUUCUGUCCCU------CGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 28978 0.66 0.856745
Target:  5'- uCCGCCCGCCc---CAGGGGGCg---- -3'
miRNA:   3'- -GGUGGGUGGuucuGUCCCUCGgucuu -5'
5105 3' -57.3 NC_001798.1 + 29391 0.68 0.760915
Target:  5'- aCCACUCaggGCCGcgccGGCGGGGcGCCGGGGg -3'
miRNA:   3'- -GGUGGG---UGGUu---CUGUCCCuCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 30003 0.69 0.702098
Target:  5'- gCCGCCCcCCGacccucuggggGGGCgAGGGAGgCAGGGa -3'
miRNA:   3'- -GGUGGGuGGU-----------UCUG-UCCCUCgGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 30128 0.71 0.58906
Target:  5'- cCCcCCCuuCCGaacaaaaagcagcGGGCGGGGGGCCGGGGu -3'
miRNA:   3'- -GGuGGGu-GGU-------------UCUGUCCCUCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 30366 0.7 0.64115
Target:  5'- uCCACCU-CCGAGGCGGGcAGCaCGGAc -3'
miRNA:   3'- -GGUGGGuGGUUCUGUCCcUCG-GUCUu -5'
5105 3' -57.3 NC_001798.1 + 30471 0.66 0.824221
Target:  5'- aCGCCCGCCGAcgcGCAGGGAuCCuguGGGg -3'
miRNA:   3'- gGUGGGUGGUUc--UGUCCCUcGGu--CUU- -5'
5105 3' -57.3 NC_001798.1 + 31967 0.71 0.549719
Target:  5'- cUCGCCCcCCAGGGgGuGGGGGCCAaGAGg -3'
miRNA:   3'- -GGUGGGuGGUUCUgU-CCCUCGGU-CUU- -5'
5105 3' -57.3 NC_001798.1 + 32883 0.73 0.444324
Target:  5'- aCCACCgGCCGAGGCGccucGGGGGCaGGGGg -3'
miRNA:   3'- -GGUGGgUGGUUCUGU----CCCUCGgUCUU- -5'
5105 3' -57.3 NC_001798.1 + 33444 0.71 0.56981
Target:  5'- gCCGCaCCACCGgcgcgaAGcCAGGG-GCCAGGGa -3'
miRNA:   3'- -GGUG-GGUGGU------UCuGUCCCuCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 34974 0.68 0.751344
Target:  5'- gCGgCCGCCGAGguGCGGGGgccccuccGGCCGGGg -3'
miRNA:   3'- gGUgGGUGGUUC--UGUCCC--------UCGGUCUu -5'
5105 3' -57.3 NC_001798.1 + 42459 0.67 0.779707
Target:  5'- gCCAcCCCACgCAucguCAGGGAGCCGu-- -3'
miRNA:   3'- -GGU-GGGUG-GUucu-GUCCCUCGGUcuu -5'
5105 3' -57.3 NC_001798.1 + 44044 0.66 0.824221
Target:  5'- gCGCCCcCCAAG-CGcGGAGCCuGGAg -3'
miRNA:   3'- gGUGGGuGGUUCuGUcCCUCGGuCUU- -5'
5105 3' -57.3 NC_001798.1 + 47369 0.66 0.824221
Target:  5'- uCC-CCCGCaacccGCAGGGAGCCAc-- -3'
miRNA:   3'- -GGuGGGUGguuc-UGUCCCUCGGUcuu -5'
5105 3' -57.3 NC_001798.1 + 52273 0.67 0.806881
Target:  5'- uCCGCCCACCccgcguuugcGGACGuGGAGCaGGAGg -3'
miRNA:   3'- -GGUGGGUGGu---------UCUGUcCCUCGgUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.