miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5105 3' -57.3 NC_001798.1 + 125783 0.68 0.760915
Target:  5'- gCACCUccggGCCGAGguguACAGGGA-CCAGAc -3'
miRNA:   3'- gGUGGG----UGGUUC----UGUCCCUcGGUCUu -5'
5105 3' -57.3 NC_001798.1 + 125304 0.73 0.462691
Target:  5'- aCCGCCCgcACCA--GCucGGGGGCCAGGAa -3'
miRNA:   3'- -GGUGGG--UGGUucUGu-CCCUCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 124493 0.67 0.779707
Target:  5'- cCCcCCCGCCAuggcGGGgGGGGGGCUgcGGGc -3'
miRNA:   3'- -GGuGGGUGGU----UCUgUCCCUCGG--UCUu -5'
5105 3' -57.3 NC_001798.1 + 118294 0.69 0.651374
Target:  5'- cCCGCCCcccCCAggggggcuuGGACuGGGAGCCGcGAu -3'
miRNA:   3'- -GGUGGGu--GGU---------UCUGuCCCUCGGU-CUu -5'
5105 3' -57.3 NC_001798.1 + 117297 0.66 0.840862
Target:  5'- -gGCCCGCCAcgaaacGGGCGGGGGGgUCAa-- -3'
miRNA:   3'- ggUGGGUGGU------UCUGUCCCUC-GGUcuu -5'
5105 3' -57.3 NC_001798.1 + 111865 0.75 0.33587
Target:  5'- gCCGCUCACCAGGggcuccagcgaGCucGGGAGCCGGGGg -3'
miRNA:   3'- -GGUGGGUGGUUC-----------UGu-CCCUCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 111571 0.72 0.510255
Target:  5'- aCACCCACCAcAGcucccugaGCGGGGGGCCcGGc -3'
miRNA:   3'- gGUGGGUGGU-UC--------UGUCCCUCGGuCUu -5'
5105 3' -57.3 NC_001798.1 + 110046 0.66 0.827607
Target:  5'- gCCACCCACCAGuguaGCGGcccgucgcacaacgcGGAGCCccGGAu -3'
miRNA:   3'- -GGUGGGUGGUUc---UGUC---------------CCUCGG--UCUu -5'
5105 3' -57.3 NC_001798.1 + 104162 0.69 0.651374
Target:  5'- cCCGCCUgggcguCCAGGcACAGGGcGGCCAGc- -3'
miRNA:   3'- -GGUGGGu-----GGUUC-UGUCCC-UCGGUCuu -5'
5105 3' -57.3 NC_001798.1 + 97587 0.71 0.579925
Target:  5'- -nGCCCcgaGCCAGGggcGCAGGG-GCCGGAGa -3'
miRNA:   3'- ggUGGG---UGGUUC---UGUCCCuCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 97560 0.72 0.48145
Target:  5'- aCGCCCGCgAgcgaGGACGGGGAGCgCGGc- -3'
miRNA:   3'- gGUGGGUGgU----UCUGUCCCUCG-GUCuu -5'
5105 3' -57.3 NC_001798.1 + 94564 0.67 0.770373
Target:  5'- uCCGaggCCGCCAAGGCGcGGGucGCCAGc- -3'
miRNA:   3'- -GGUg--GGUGGUUCUGU-CCCu-CGGUCuu -5'
5105 3' -57.3 NC_001798.1 + 86070 0.66 0.824221
Target:  5'- aCC-CCCGCCGu--CuGGGAGUCGGGg -3'
miRNA:   3'- -GGuGGGUGGUucuGuCCCUCGGUCUu -5'
5105 3' -57.3 NC_001798.1 + 85989 0.7 0.620687
Target:  5'- gCCG-CCGCCGGGGCgcuggcgcagggGGGuGAGCCGGAGa -3'
miRNA:   3'- -GGUgGGUGGUUCUG------------UCC-CUCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 84216 0.67 0.779707
Target:  5'- gCGCCCcCCGGGGCGccGuGGGGCCGGu- -3'
miRNA:   3'- gGUGGGuGGUUCUGU--C-CCUCGGUCuu -5'
5105 3' -57.3 NC_001798.1 + 83731 0.72 0.510255
Target:  5'- aCCGCCCACC-AGAUAGcGGcccCCAGAAa -3'
miRNA:   3'- -GGUGGGUGGuUCUGUC-CCuc-GGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 83251 0.71 0.55974
Target:  5'- -gACCCGCCGAGgacucACGGGGuGCUGGGGg -3'
miRNA:   3'- ggUGGGUGGUUC-----UGUCCCuCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 79360 0.66 0.848901
Target:  5'- gCGCguaCGCCAGGGCcGGcGGCCAGAc -3'
miRNA:   3'- gGUGg--GUGGUUCUGuCCcUCGGUCUu -5'
5105 3' -57.3 NC_001798.1 + 74640 0.67 0.788909
Target:  5'- aCCgGCCCcCCGAGGCcccccGGGGGGCCucGGGc -3'
miRNA:   3'- -GG-UGGGuGGUUCUG-----UCCCUCGG--UCUu -5'
5105 3' -57.3 NC_001798.1 + 74501 0.73 0.453457
Target:  5'- aUCACCCACCcccugcggggcGAGAuCGGGGGGCuCGGGg -3'
miRNA:   3'- -GGUGGGUGG-----------UUCU-GUCCCUCG-GUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.