miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5105 3' -57.3 NC_001798.1 + 153502 0.67 0.770373
Target:  5'- aCACCUGCgGgcggggAGACAcGGGGGUCGGAGg -3'
miRNA:   3'- gGUGGGUGgU------UCUGU-CCCUCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 152258 0.68 0.740695
Target:  5'- uCCGCCCgggagcucguGCCGGGcCGGGGuuccaugAGCCGGGGu -3'
miRNA:   3'- -GGUGGG----------UGGUUCuGUCCC-------UCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 152147 0.67 0.769433
Target:  5'- aCCACCCccaacccgcaGCCGGGugGuccggggaaaaggGGGGGCCuGAGa -3'
miRNA:   3'- -GGUGGG----------UGGUUCugU-------------CCCUCGGuCUU- -5'
5105 3' -57.3 NC_001798.1 + 151903 0.67 0.814766
Target:  5'- cCCGCCCGCUgcuuuuuguucggAAGGgGGGGAGaaAGGGg -3'
miRNA:   3'- -GGUGGGUGG-------------UUCUgUCCCUCggUCUU- -5'
5105 3' -57.3 NC_001798.1 + 151198 0.7 0.610465
Target:  5'- aCCGuguguCCCcCCAGcGACAGGGAGCgCGGGg -3'
miRNA:   3'- -GGU-----GGGuGGUU-CUGUCCCUCG-GUCUu -5'
5105 3' -57.3 NC_001798.1 + 150902 0.67 0.769433
Target:  5'- gCCGCCCccgcGCCGGGGCgcucuucGGGGGGCgggCGGGAc -3'
miRNA:   3'- -GGUGGG----UGGUUCUG-------UCCCUCG---GUCUU- -5'
5105 3' -57.3 NC_001798.1 + 149817 0.68 0.760915
Target:  5'- cCCGCCCGCagaggaaGAGGCGGaGGAGgaGGAGg -3'
miRNA:   3'- -GGUGGGUGg------UUCUGUC-CCUCggUCUU- -5'
5105 3' -57.3 NC_001798.1 + 148773 1.07 0.002517
Target:  5'- cCCACCCACCAAGACAGGGAGCCAGAAc -3'
miRNA:   3'- -GGUGGGUGGUUCUGUCCCUCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 148664 0.69 0.660564
Target:  5'- cCUGCCCACCAccccCAGGGucuggccGGCCAGAc -3'
miRNA:   3'- -GGUGGGUGGUucu-GUCCC-------UCGGUCUu -5'
5105 3' -57.3 NC_001798.1 + 146014 0.71 0.55974
Target:  5'- gCCACCCcccaaacaGCCAAGGCgcgguGGGGGGCguGGu -3'
miRNA:   3'- -GGUGGG--------UGGUUCUG-----UCCCUCGguCUu -5'
5105 3' -57.3 NC_001798.1 + 145632 0.66 0.848901
Target:  5'- aCCGcCCCGCCc-GGCAGGGGGgccCCGGc- -3'
miRNA:   3'- -GGU-GGGUGGuuCUGUCCCUC---GGUCuu -5'
5105 3' -57.3 NC_001798.1 + 142052 0.7 0.610465
Target:  5'- cCCACCCccCCGAGACauGGGGAacccCCAGAc -3'
miRNA:   3'- -GGUGGGu-GGUUCUG--UCCCUc---GGUCUu -5'
5105 3' -57.3 NC_001798.1 + 141205 0.68 0.731896
Target:  5'- -gGCCCG-CGGGACGGGGGcCCGGAc -3'
miRNA:   3'- ggUGGGUgGUUCUGUCCCUcGGUCUu -5'
5105 3' -57.3 NC_001798.1 + 139406 0.71 0.539755
Target:  5'- uCCGCCC-CCAcaGCAGcccGGGGCCAGAc -3'
miRNA:   3'- -GGUGGGuGGUucUGUC---CCUCGGUCUu -5'
5105 3' -57.3 NC_001798.1 + 135207 0.67 0.788909
Target:  5'- gCCGCCCuCgCGGGccuCGGGGAGgCCGGGc -3'
miRNA:   3'- -GGUGGGuG-GUUCu--GUCCCUC-GGUCUu -5'
5105 3' -57.3 NC_001798.1 + 134598 0.66 0.856745
Target:  5'- uCCGCCgACCAGGAaggAGGGcGCCu--- -3'
miRNA:   3'- -GGUGGgUGGUUCUg--UCCCuCGGucuu -5'
5105 3' -57.3 NC_001798.1 + 133841 0.66 0.821663
Target:  5'- gCUuCCCACCGAGgccuggcccaugauGCAGGGGGCgGuGAAc -3'
miRNA:   3'- -GGuGGGUGGUUC--------------UGUCCCUCGgU-CUU- -5'
5105 3' -57.3 NC_001798.1 + 132968 0.67 0.815634
Target:  5'- cCCAggCCGCCGAGACGGaGGAGgUGGGc -3'
miRNA:   3'- -GGUg-GGUGGUUCUGUC-CCUCgGUCUu -5'
5105 3' -57.3 NC_001798.1 + 132180 0.69 0.661584
Target:  5'- aCGCCCcCCcGGACgccaccuucuucGGGGAGCUGGAGg -3'
miRNA:   3'- gGUGGGuGGuUCUG------------UCCCUCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 129351 0.69 0.661584
Target:  5'- gCGCCCGCCGGGccugGCGGGGcccCCGGAc -3'
miRNA:   3'- gGUGGGUGGUUC----UGUCCCuc-GGUCUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.