miRNA display CGI


Results 41 - 60 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5105 3' -57.3 NC_001798.1 + 68448 0.67 0.769433
Target:  5'- -gGCUCGCCGAGcaccGCGGGGAuugcgagcucgcgGCCGGGAc -3'
miRNA:   3'- ggUGGGUGGUUC----UGUCCCU-------------CGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 149817 0.68 0.760915
Target:  5'- cCCGCCCGCagaggaaGAGGCGGaGGAGgaGGAGg -3'
miRNA:   3'- -GGUGGGUGg------UUCUGUC-CCUCggUCUU- -5'
5105 3' -57.3 NC_001798.1 + 125783 0.68 0.760915
Target:  5'- gCACCUccggGCCGAGguguACAGGGA-CCAGAc -3'
miRNA:   3'- gGUGGG----UGGUUC----UGUCCCUcGGUCUu -5'
5105 3' -57.3 NC_001798.1 + 29391 0.68 0.760915
Target:  5'- aCCACUCaggGCCGcgccGGCGGGGcGCCGGGGg -3'
miRNA:   3'- -GGUGGG---UGGUu---CUGUCCCuCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 34974 0.68 0.751344
Target:  5'- gCGgCCGCCGAGguGCGGGGgccccuccGGCCGGGg -3'
miRNA:   3'- gGUgGGUGGUUC--UGUCCC--------UCGGUCUu -5'
5105 3' -57.3 NC_001798.1 + 19847 0.68 0.741668
Target:  5'- aCACgCGcCCGGGGCGGGuaGGCCAGAGc -3'
miRNA:   3'- gGUGgGU-GGUUCUGUCCc-UCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 152258 0.68 0.740695
Target:  5'- uCCGCCCgggagcucguGCCGGGcCGGGGuuccaugAGCCGGGGu -3'
miRNA:   3'- -GGUGGG----------UGGUUCuGUCCC-------UCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 141205 0.68 0.731896
Target:  5'- -gGCCCG-CGGGACGGGGGcCCGGAc -3'
miRNA:   3'- ggUGGGUgGUUCUGUCCCUcGGUCUu -5'
5105 3' -57.3 NC_001798.1 + 69095 0.68 0.731896
Target:  5'- cCCGCCCGgaccCCAGGGCGGaGGccuCCAGGAg -3'
miRNA:   3'- -GGUGGGU----GGUUCUGUC-CCuc-GGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 30003 0.69 0.702098
Target:  5'- gCCGCCCcCCGacccucuggggGGGCgAGGGAGgCAGGGa -3'
miRNA:   3'- -GGUGGGuGGU-----------UCUG-UCCCUCgGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 27214 0.69 0.671769
Target:  5'- -aGCCC-CCGGGGCGGGGcGCgGGGGa -3'
miRNA:   3'- ggUGGGuGGUUCUGUCCCuCGgUCUU- -5'
5105 3' -57.3 NC_001798.1 + 1969 0.69 0.671769
Target:  5'- gCGCCCagcGCCGAGACGucGGGGGCgCGGu- -3'
miRNA:   3'- gGUGGG---UGGUUCUGU--CCCUCG-GUCuu -5'
5105 3' -57.3 NC_001798.1 + 132180 0.69 0.661584
Target:  5'- aCGCCCcCCcGGACgccaccuucuucGGGGAGCUGGAGg -3'
miRNA:   3'- gGUGGGuGGuUCUG------------UCCCUCGGUCUU- -5'
5105 3' -57.3 NC_001798.1 + 129351 0.69 0.661584
Target:  5'- gCGCCCGCCGGGccugGCGGGGcccCCGGAc -3'
miRNA:   3'- gGUGGGUGGUUC----UGUCCCuc-GGUCUu -5'
5105 3' -57.3 NC_001798.1 + 148664 0.69 0.660564
Target:  5'- cCUGCCCACCAccccCAGGGucuggccGGCCAGAc -3'
miRNA:   3'- -GGUGGGUGGUucu-GUCCC-------UCGGUCUu -5'
5105 3' -57.3 NC_001798.1 + 118294 0.69 0.651374
Target:  5'- cCCGCCCcccCCAggggggcuuGGACuGGGAGCCGcGAu -3'
miRNA:   3'- -GGUGGGu--GGU---------UCUGuCCCUCGGU-CUu -5'
5105 3' -57.3 NC_001798.1 + 104162 0.69 0.651374
Target:  5'- cCCGCCUgggcguCCAGGcACAGGGcGGCCAGc- -3'
miRNA:   3'- -GGUGGGu-----GGUUC-UGUCCC-UCGGUCuu -5'
5105 3' -57.3 NC_001798.1 + 9033 0.69 0.651374
Target:  5'- aCCGCCCcccgcaGCCAGcGCAcGGcGAGCCAGGu -3'
miRNA:   3'- -GGUGGG------UGGUUcUGU-CC-CUCGGUCUu -5'
5105 3' -57.3 NC_001798.1 + 30366 0.7 0.64115
Target:  5'- uCCACCU-CCGAGGCGGGcAGCaCGGAc -3'
miRNA:   3'- -GGUGGGuGGUUCUGUCCcUCG-GUCUu -5'
5105 3' -57.3 NC_001798.1 + 59102 0.7 0.630918
Target:  5'- -aGCCCAgCGuGGCGGccuGGAGCCAGAGa -3'
miRNA:   3'- ggUGGGUgGUuCUGUC---CCUCGGUCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.