Results 41 - 60 of 168 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5106 | 3' | -62.7 | NC_001798.1 | + | 1334 | 0.66 | 0.626907 |
Target: 5'- aCUCCCgccgcggcccgcgcaGCUCCgccgGgCCGCCGCgcacggcgucgcgCCCCAGc -3' miRNA: 3'- -GAGGG---------------UGAGGa---CgGGUGGUG-------------GGGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 34129 | 0.66 | 0.633778 |
Target: 5'- -gCCCgAC-CCgcGCCUGCC-CCCCCGGg -3' miRNA: 3'- gaGGG-UGaGGa-CGGGUGGuGGGGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 92139 | 0.66 | 0.633778 |
Target: 5'- cCUCCCcCgUCUGCCCccggucgucuuGCCggGCCCCCGu -3' miRNA: 3'- -GAGGGuGaGGACGGG-----------UGG--UGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 93752 | 0.66 | 0.633778 |
Target: 5'- aUgCgGCUgCggGCCCGCCACCCCa-- -3' miRNA: 3'- gAgGgUGAgGa-CGGGUGGUGGGGguc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 96999 | 0.66 | 0.633778 |
Target: 5'- --gCCAgggCCgGCCCGCCGCCCgCCGa -3' miRNA: 3'- gagGGUga-GGaCGGGUGGUGGG-GGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 71999 | 0.66 | 0.614155 |
Target: 5'- --gCCACgugcaaCgCUGCCUACCugCCCCGc -3' miRNA: 3'- gagGGUGa-----G-GACGGGUGGugGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 25682 | 0.66 | 0.614155 |
Target: 5'- -aCCgGCUCUgcggGCCCGCCacgGCCgCCUGGg -3' miRNA: 3'- gaGGgUGAGGa---CGGGUGG---UGG-GGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 1161 | 0.66 | 0.594582 |
Target: 5'- -cCCCGCggCggucCCCACCACCUCCAc -3' miRNA: 3'- gaGGGUGagGac--GGGUGGUGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 127652 | 0.66 | 0.594582 |
Target: 5'- uCUCCCGCcUCUGUCaCGCCAa-CCCGGc -3' miRNA: 3'- -GAGGGUGaGGACGG-GUGGUggGGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 125281 | 0.66 | 0.594582 |
Target: 5'- aCUCCCGaaaCCgcagGCgCGCCACCgCCCGc -3' miRNA: 3'- -GAGGGUga-GGa---CGgGUGGUGG-GGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 4114 | 0.66 | 0.603381 |
Target: 5'- -gCCCugggcggGCUCg-GCCggggCGCCGCCCCCGGg -3' miRNA: 3'- gaGGG-------UGAGgaCGG----GUGGUGGGGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 62812 | 0.66 | 0.604359 |
Target: 5'- uUCUgGCgcagCUguggGCCCACgCGCCCCCGc -3' miRNA: 3'- gAGGgUGa---GGa---CGGGUG-GUGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 5306 | 0.66 | 0.604359 |
Target: 5'- -gCCgCGCcCCgGCUCGCCgggguuccGCCCCCAGg -3' miRNA: 3'- gaGG-GUGaGGaCGGGUGG--------UGGGGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 19010 | 0.66 | 0.604359 |
Target: 5'- uUUCgGCUCCUGCaucaagagCGCCccgGCCCCCAc -3' miRNA: 3'- gAGGgUGAGGACGg-------GUGG---UGGGGGUc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 35948 | 0.66 | 0.604359 |
Target: 5'- uUCCUucgCCcGCCCGCCuCgCCCCGGa -3' miRNA: 3'- gAGGGugaGGaCGGGUGGuG-GGGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 63051 | 0.66 | 0.604359 |
Target: 5'- uUCCCuuUCCccagCCGCCACCCCCc- -3' miRNA: 3'- gAGGGugAGGacg-GGUGGUGGGGGuc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 134380 | 0.66 | 0.604359 |
Target: 5'- --gCCGCUCCUcGCgCCGCC-CUCCUGGa -3' miRNA: 3'- gagGGUGAGGA-CG-GGUGGuGGGGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 31953 | 0.66 | 0.604359 |
Target: 5'- -cCCCGCgCUcGCCCcUCGcCCCCCAGg -3' miRNA: 3'- gaGGGUGaGGaCGGGuGGU-GGGGGUC- -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 57834 | 0.66 | 0.604359 |
Target: 5'- cCUCCCAaccuaacacCCUaacagugauggGCCCGCCugCCCCc- -3' miRNA: 3'- -GAGGGUga-------GGA-----------CGGGUGGugGGGGuc -5' |
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5106 | 3' | -62.7 | NC_001798.1 | + | 102900 | 0.66 | 0.604359 |
Target: 5'- aUCCCGg-CCUG-CCGCCGCCgCUCGGc -3' miRNA: 3'- gAGGGUgaGGACgGGUGGUGG-GGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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