miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5106 3' -62.7 NC_001798.1 + 30864 0.7 0.378685
Target:  5'- gUCCgCGC-CCUgucGCCCACC-CCCCCGu -3'
miRNA:   3'- gAGG-GUGaGGA---CGGGUGGuGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 31173 0.66 0.62102
Target:  5'- -aCCCGCggaaCCUcccaGCCCGCCgcgacccgaccggcGCCCCCuGg -3'
miRNA:   3'- gaGGGUGa---GGA----CGGGUGG--------------UGGGGGuC- -5'
5106 3' -62.7 NC_001798.1 + 31623 0.69 0.453967
Target:  5'- -cCCCGCgCCg--CCGCCGCCCCCGu -3'
miRNA:   3'- gaGGGUGaGGacgGGUGGUGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 31953 0.66 0.604359
Target:  5'- -cCCCGCgCUcGCCCcUCGcCCCCCAGg -3'
miRNA:   3'- gaGGGUGaGGaCGGGuGGU-GGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 33604 0.66 0.584831
Target:  5'- -aCCCGCaCUUacGCCCGugcCCACCCCCGc -3'
miRNA:   3'- gaGGGUGaGGA--CGGGU---GGUGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 33649 0.77 0.140251
Target:  5'- -gCCCGCacaCCUGCCCGCCACgCCCGc -3'
miRNA:   3'- gaGGGUGa--GGACGGGUGGUGgGGGUc -5'
5106 3' -62.7 NC_001798.1 + 33756 0.77 0.140251
Target:  5'- -gCCCGCacaCCUGCCCGCCACgCCCGc -3'
miRNA:   3'- gaGGGUGa--GGACGGGUGGUGgGGGUc -5'
5106 3' -62.7 NC_001798.1 + 33931 0.67 0.565428
Target:  5'- -aCCCGCgcgCgUGCCUACCuuUCCCUAGc -3'
miRNA:   3'- gaGGGUGa--GgACGGGUGGu-GGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 34129 0.66 0.633778
Target:  5'- -gCCCgAC-CCgcGCCUGCC-CCCCCGGg -3'
miRNA:   3'- gaGGG-UGaGGa-CGGGUGGuGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 34408 0.67 0.555788
Target:  5'- gCUCUCuucuCUCUUccGCCCGCCcCCCCCc- -3'
miRNA:   3'- -GAGGGu---GAGGA--CGGGUGGuGGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 35617 0.68 0.489936
Target:  5'- gCUCCgCACUCUgcccgGCUCGCCccguCCCCCc- -3'
miRNA:   3'- -GAGG-GUGAGGa----CGGGUGGu---GGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 35740 0.68 0.489936
Target:  5'- cCUCCCGC-CCgGCCgC-CCACuCCCCGc -3'
miRNA:   3'- -GAGGGUGaGGaCGG-GuGGUG-GGGGUc -5'
5106 3' -62.7 NC_001798.1 + 35882 0.7 0.363129
Target:  5'- aCUCCCcauCUUCUGCCCuuCCAUCCuCCGu -3'
miRNA:   3'- -GAGGGu--GAGGACGGGu-GGUGGG-GGUc -5'
5106 3' -62.7 NC_001798.1 + 35921 0.69 0.41948
Target:  5'- uUUCCAC-CCcGCcgCCACCACCCCCc- -3'
miRNA:   3'- gAGGGUGaGGaCG--GGUGGUGGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 35948 0.66 0.604359
Target:  5'- uUCCUucgCCcGCCCGCCuCgCCCCGGa -3'
miRNA:   3'- gAGGGugaGGaCGGGUGGuG-GGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 36214 0.66 0.57511
Target:  5'- aCUCCCACcCCga-CCGCCGCCgcgCCCGc -3'
miRNA:   3'- -GAGGGUGaGGacgGGUGGUGG---GGGUc -5'
5106 3' -62.7 NC_001798.1 + 40306 0.7 0.386628
Target:  5'- cCUCCUugUCCcuccccgucggGCgUCACCGCCCCCGc -3'
miRNA:   3'- -GAGGGugAGGa----------CG-GGUGGUGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 42670 0.67 0.546196
Target:  5'- cCUCCCACUCCUcGUcgccgggaCCACCGgCgUCGGg -3'
miRNA:   3'- -GAGGGUGAGGA-CG--------GGUGGUgGgGGUC- -5'
5106 3' -62.7 NC_001798.1 + 46393 0.66 0.57511
Target:  5'- -cCCCGCgccgucuggCCggcagGgCCACCGCCCCCc- -3'
miRNA:   3'- gaGGGUGa--------GGa----CgGGUGGUGGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 47995 0.68 0.480816
Target:  5'- aCUCCgCcguGCUCCUagacGCCC-CCGCUCCCAc -3'
miRNA:   3'- -GAGG-G---UGAGGA----CGGGuGGUGGGGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.