miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5106 3' -62.7 NC_001798.1 + 5306 0.66 0.604359
Target:  5'- -gCCgCGCcCCgGCUCGCCgggguuccGCCCCCAGg -3'
miRNA:   3'- gaGG-GUGaGGaCGGGUGG--------UGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 5555 0.67 0.565428
Target:  5'- -cCCgCGCUCCcguugGCCCccGCCGgCCCCAa -3'
miRNA:   3'- gaGG-GUGAGGa----CGGG--UGGUgGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 7395 0.68 0.508413
Target:  5'- gUCCCGCgcauaCCcaggGaCCCGCgACCCCCAc -3'
miRNA:   3'- gAGGGUGa----GGa---C-GGGUGgUGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 7777 0.69 0.411109
Target:  5'- -aCCCACga---CCCACCGCCCCCGc -3'
miRNA:   3'- gaGGGUGaggacGGGUGGUGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 9006 0.67 0.527178
Target:  5'- aUCCCGCacaggacggCCccgaGaCCCACCGCCCCCc- -3'
miRNA:   3'- gAGGGUGa--------GGa---C-GGGUGGUGGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 14600 0.73 0.249242
Target:  5'- -aCCCACUgauaCCU-CCCACCccccGCCCCCAGu -3'
miRNA:   3'- gaGGGUGA----GGAcGGGUGG----UGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 14716 0.71 0.333369
Target:  5'- uUCCCG-UCCUucaucguuucucGCCCcCCACCCCCAc -3'
miRNA:   3'- gAGGGUgAGGA------------CGGGuGGUGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 18915 0.71 0.319174
Target:  5'- -aCCCGCUCCUGUCgCugU-CCCCCAa -3'
miRNA:   3'- gaGGGUGAGGACGG-GugGuGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 19010 0.66 0.604359
Target:  5'- uUUCgGCUCCUGCaucaagagCGCCccgGCCCCCAc -3'
miRNA:   3'- gAGGgUGAGGACGg-------GUGG---UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 23276 0.7 0.394681
Target:  5'- -cCCCAUggccagCCUGUcgCCGCgACCCCCGGc -3'
miRNA:   3'- gaGGGUGa-----GGACG--GGUGgUGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 23810 0.73 0.266963
Target:  5'- -gCCCGgggCCgGCCCcCCGCCCCCGGg -3'
miRNA:   3'- gaGGGUga-GGaCGGGuGGUGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 25159 0.7 0.363129
Target:  5'- cCUCCCGCgggggCCgcGCCCcCCGCCCCg-- -3'
miRNA:   3'- -GAGGGUGa----GGa-CGGGuGGUGGGGguc -5'
5106 3' -62.7 NC_001798.1 + 25448 0.66 0.584831
Target:  5'- -cCCCGCcCCccggcggcgcGCCCGCCGCCUUCGGc -3'
miRNA:   3'- gaGGGUGaGGa---------CGGGUGGUGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 25682 0.66 0.614155
Target:  5'- -aCCgGCUCUgcggGCCCGCCacgGCCgCCUGGg -3'
miRNA:   3'- gaGGgUGAGGa---CGGGUGG---UGG-GGGUC- -5'
5106 3' -62.7 NC_001798.1 + 27627 0.68 0.471778
Target:  5'- cCUgCCGC-CC-GCCCGCCGCCgCCGc -3'
miRNA:   3'- -GAgGGUGaGGaCGGGUGGUGGgGGUc -5'
5106 3' -62.7 NC_001798.1 + 27726 0.7 0.370851
Target:  5'- gUCCCcgUCCUG-CCGCCGCCCCUuaAGa -3'
miRNA:   3'- gAGGGugAGGACgGGUGGUGGGGG--UC- -5'
5106 3' -62.7 NC_001798.1 + 27871 0.7 0.355519
Target:  5'- gCUCCgGCUCCggGCCUacgccgagcccaGCCGCCCgCCAu -3'
miRNA:   3'- -GAGGgUGAGGa-CGGG------------UGGUGGG-GGUc -5'
5106 3' -62.7 NC_001798.1 + 27912 0.69 0.453967
Target:  5'- gUCCCGCcgCCgggGUCC-CCGCCgCCGGg -3'
miRNA:   3'- gAGGGUGa-GGa--CGGGuGGUGGgGGUC- -5'
5106 3' -62.7 NC_001798.1 + 27959 0.67 0.536658
Target:  5'- -cCCCggcGCUCCaGCCgUGCCGCgCCCCGGc -3'
miRNA:   3'- gaGGG---UGAGGaCGG-GUGGUG-GGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 28233 0.7 0.370851
Target:  5'- cCUgCCGCcgCCUGCCCcCCGCCgCCGc -3'
miRNA:   3'- -GAgGGUGa-GGACGGGuGGUGGgGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.