miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5106 3' -62.7 NC_001798.1 + 147306 0.7 0.394681
Target:  5'- -cCCCGCUCCcggGCCCGacccUCGCCCCUu- -3'
miRNA:   3'- gaGGGUGAGGa--CGGGU----GGUGGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 146968 0.7 0.361598
Target:  5'- cCUCCCGucuucuuccgcgcCUCCgaggGUCCGCCucuugccucggggACCCCCGGg -3'
miRNA:   3'- -GAGGGU-------------GAGGa---CGGGUGG-------------UGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 146613 0.68 0.507483
Target:  5'- -gCCCACgCCU-CCCGCCgcauuagGCCCCCGc -3'
miRNA:   3'- gaGGGUGaGGAcGGGUGG-------UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 139590 0.67 0.546196
Target:  5'- gUCCCGa-CCgGCCUGCCGCUCCgGGa -3'
miRNA:   3'- gAGGGUgaGGaCGGGUGGUGGGGgUC- -5'
5106 3' -62.7 NC_001798.1 + 137966 0.7 0.402842
Target:  5'- gCUCCCGCUCCagcGCCC-CCGCCUg--- -3'
miRNA:   3'- -GAGGGUGAGGa--CGGGuGGUGGGgguc -5'
5106 3' -62.7 NC_001798.1 + 136325 0.7 0.378685
Target:  5'- uUUCCACcaCCaGCaCCACCACCCCCc- -3'
miRNA:   3'- gAGGGUGa-GGaCG-GGUGGUGGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 135195 0.66 0.584831
Target:  5'- -gCCCAgCUCCUGgCCGCC-CUCgCGGg -3'
miRNA:   3'- gaGGGU-GAGGACgGGUGGuGGGgGUC- -5'
5106 3' -62.7 NC_001798.1 + 134429 0.66 0.584831
Target:  5'- -aCCCGCUggcCCUGUCCGCgCGCgucgccgagcaCCCCGGc -3'
miRNA:   3'- gaGGGUGA---GGACGGGUG-GUG-----------GGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 134380 0.66 0.604359
Target:  5'- --gCCGCUCCUcGCgCCGCC-CUCCUGGa -3'
miRNA:   3'- gagGGUGAGGA-CG-GGUGGuGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 132103 0.7 0.405311
Target:  5'- uCUCCCGCgccuggggcccgaggUCCUgcaggcgGCCCugCGCCgCCGGg -3'
miRNA:   3'- -GAGGGUG---------------AGGA-------CGGGugGUGGgGGUC- -5'
5106 3' -62.7 NC_001798.1 + 130239 0.72 0.292158
Target:  5'- -gCCCGgguCUCCgggcgGCCCGCCACgCCUAGa -3'
miRNA:   3'- gaGGGU---GAGGa----CGGGUGGUGgGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 129760 0.73 0.237975
Target:  5'- -gCCCGCccUCCUGCCaCGCUcacGCCCCCAc -3'
miRNA:   3'- gaGGGUG--AGGACGG-GUGG---UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 128751 0.69 0.427953
Target:  5'- cCUCaCgGCUaCCUGgCCC-CCGcCCCCCAGa -3'
miRNA:   3'- -GAG-GgUGA-GGAC-GGGuGGU-GGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 127990 0.69 0.41948
Target:  5'- -gCCUcaUCCgGCCCGCCaACCCCCGa -3'
miRNA:   3'- gaGGGugAGGaCGGGUGG-UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 127773 0.66 0.57511
Target:  5'- -cCCCGCggacCCcGCCCGCgACCCCg-- -3'
miRNA:   3'- gaGGGUGa---GGaCGGGUGgUGGGGguc -5'
5106 3' -62.7 NC_001798.1 + 127652 0.66 0.594582
Target:  5'- uCUCCCGCcUCUGUCaCGCCAa-CCCGGc -3'
miRNA:   3'- -GAGGGUGaGGACGG-GUGGUggGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 126320 0.66 0.623964
Target:  5'- -gCCCGCcCCggGuCCCGCCGCCgaUCCAGc -3'
miRNA:   3'- gaGGGUGaGGa-C-GGGUGGUGG--GGGUC- -5'
5106 3' -62.7 NC_001798.1 + 125281 0.66 0.594582
Target:  5'- aCUCCCGaaaCCgcagGCgCGCCACCgCCCGc -3'
miRNA:   3'- -GAGGGUga-GGa---CGgGUGGUGG-GGGUc -5'
5106 3' -62.7 NC_001798.1 + 122502 0.67 0.52529
Target:  5'- uUCCCGCgcucgagggaccCCUGCgCCACCcgcGCCCCguGc -3'
miRNA:   3'- gAGGGUGa-----------GGACG-GGUGG---UGGGGguC- -5'
5106 3' -62.7 NC_001798.1 + 121707 0.71 0.326924
Target:  5'- gCUCCCGCcgCCgcgacggaggcggcgGCCCACCugUCCCuGg -3'
miRNA:   3'- -GAGGGUGa-GGa--------------CGGGUGGugGGGGuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.