miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5106 3' -62.7 NC_001798.1 + 584 0.72 0.298077
Target:  5'- cCUCCCGCUCCUGCgggggggcucgggCCACCugACCUUCGu -3'
miRNA:   3'- -GAGGGUGAGGACG-------------GGUGG--UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 98463 0.72 0.29874
Target:  5'- -aCUCGgUCCUGCagCACCucGCCCCCAGa -3'
miRNA:   3'- gaGGGUgAGGACGg-GUGG--UGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 81855 0.72 0.29874
Target:  5'- cCUCCCGaccagCC-GCCCACCccggaguccgcGCCCCCGGc -3'
miRNA:   3'- -GAGGGUga---GGaCGGGUGG-----------UGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 50149 0.72 0.29874
Target:  5'- -cCCCGCagaCUGUCCACCaccGCCCCCAu -3'
miRNA:   3'- gaGGGUGag-GACGGGUGG---UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 18915 0.71 0.319174
Target:  5'- -aCCCGCUCCUGUCgCugU-CCCCCAa -3'
miRNA:   3'- gaGGGUGAGGACGG-GugGuGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 69084 0.71 0.319174
Target:  5'- --gCCGCUCUcgGCCCGCCcggaCCCCAGg -3'
miRNA:   3'- gagGGUGAGGa-CGGGUGGug--GGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 152003 0.71 0.319174
Target:  5'- -cCCCGCUcucgggcuccucCCUGCCUcccucGCC-CCCCCAGa -3'
miRNA:   3'- gaGGGUGA------------GGACGGG-----UGGuGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 91400 0.71 0.319174
Target:  5'- gUCgUugUCCUGCUauaCGCCGCCCCCu- -3'
miRNA:   3'- gAGgGugAGGACGG---GUGGUGGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 121707 0.71 0.326924
Target:  5'- gCUCCCGCcgCCgcgacggaggcggcgGCCCACCugUCCCuGg -3'
miRNA:   3'- -GAGGGUGa-GGa--------------CGGGUGGugGGGGuC- -5'
5106 3' -62.7 NC_001798.1 + 118274 0.71 0.333369
Target:  5'- -aCCCACacacacccCCUGucCCCGCCcCCCCCAGg -3'
miRNA:   3'- gaGGGUGa-------GGAC--GGGUGGuGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 14716 0.71 0.333369
Target:  5'- uUCCCG-UCCUucaucguuucucGCCCcCCACCCCCAc -3'
miRNA:   3'- gAGGGUgAGGA------------CGGGuGGUGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 74594 0.7 0.355519
Target:  5'- gUCCCcgcGCUCCccgcGCCCACCcacguccagACCCCUGGg -3'
miRNA:   3'- gAGGG---UGAGGa---CGGGUGG---------UGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 27871 0.7 0.355519
Target:  5'- gCUCCgGCUCCggGCCUacgccgagcccaGCCGCCCgCCAu -3'
miRNA:   3'- -GAGGgUGAGGa-CGGG------------UGGUGGG-GGUc -5'
5106 3' -62.7 NC_001798.1 + 146968 0.7 0.361598
Target:  5'- cCUCCCGucuucuuccgcgcCUCCgaggGUCCGCCucuugccucggggACCCCCGGg -3'
miRNA:   3'- -GAGGGU-------------GAGGa---CGGGUGG-------------UGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 25159 0.7 0.363129
Target:  5'- cCUCCCGCgggggCCgcGCCCcCCGCCCCg-- -3'
miRNA:   3'- -GAGGGUGa----GGa-CGGGuGGUGGGGguc -5'
5106 3' -62.7 NC_001798.1 + 35882 0.7 0.363129
Target:  5'- aCUCCCcauCUUCUGCCCuuCCAUCCuCCGu -3'
miRNA:   3'- -GAGGGu--GAGGACGGGu-GGUGGG-GGUc -5'
5106 3' -62.7 NC_001798.1 + 27726 0.7 0.370851
Target:  5'- gUCCCcgUCCUG-CCGCCGCCCCUuaAGa -3'
miRNA:   3'- gAGGGugAGGACgGGUGGUGGGGG--UC- -5'
5106 3' -62.7 NC_001798.1 + 28233 0.7 0.370851
Target:  5'- cCUgCCGCcgCCUGCCCcCCGCCgCCGc -3'
miRNA:   3'- -GAgGGUGa-GGACGGGuGGUGGgGGUc -5'
5106 3' -62.7 NC_001798.1 + 152121 0.7 0.370851
Target:  5'- -cCCCGCcCCcgaGCCCACCGCCCgCGa -3'
miRNA:   3'- gaGGGUGaGGa--CGGGUGGUGGGgGUc -5'
5106 3' -62.7 NC_001798.1 + 114100 0.7 0.370851
Target:  5'- --gCCGCggccaUCCUGCCCACCGgCUCCAu -3'
miRNA:   3'- gagGGUG-----AGGACGGGUGGUgGGGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.