miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5106 3' -62.7 NC_001798.1 + 154336 0.68 0.480816
Target:  5'- aCUCCCGC-CCcGCCU-CUuuuCCCCCGGg -3'
miRNA:   3'- -GAGGGUGaGGaCGGGuGGu--GGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 153411 0.67 0.536658
Target:  5'- -gCCCGCUCgCgcGCCCAggACCCCCGu -3'
miRNA:   3'- gaGGGUGAG-Ga-CGGGUggUGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 152121 0.7 0.370851
Target:  5'- -cCCCGCcCCcgaGCCCACCGCCCgCGa -3'
miRNA:   3'- gaGGGUGaGGa--CGGGUGGUGGGgGUc -5'
5106 3' -62.7 NC_001798.1 + 152003 0.71 0.319174
Target:  5'- -cCCCGCUcucgggcuccucCCUGCCUcccucGCC-CCCCCAGa -3'
miRNA:   3'- gaGGGUGA------------GGACGGG-----UGGuGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 151525 0.69 0.4452
Target:  5'- cCUCCCGCuuccgcuuccUCCUcaCCCAcgggcCCACCCCCAc -3'
miRNA:   3'- -GAGGGUG----------AGGAc-GGGU-----GGUGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 151095 0.66 0.614155
Target:  5'- -cCCCGC-CCgcccCCCGCCcgACCCCCGc -3'
miRNA:   3'- gaGGGUGaGGac--GGGUGG--UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 151062 0.66 0.614155
Target:  5'- -cCCCGC-CCgaccCCCGCCcgACCCCCGc -3'
miRNA:   3'- gaGGGUGaGGac--GGGUGG--UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 151029 0.66 0.614155
Target:  5'- -cCCCGC-CCgaccCCCGCCcgACCCCCGc -3'
miRNA:   3'- gaGGGUGaGGac--GGGUGG--UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 150996 0.66 0.614155
Target:  5'- -cCCCGC-CCgaccCCCGCCcgACCCCCGc -3'
miRNA:   3'- gaGGGUGaGGac--GGGUGG--UGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 150879 0.68 0.471778
Target:  5'- gUUCCGCgggucgccCCcGCaCCGCCGCCCCCGc -3'
miRNA:   3'- gAGGGUGa-------GGaCG-GGUGGUGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 150694 0.67 0.536658
Target:  5'- -aCCCGCgcgCCUGCgCGCgC-CCCCCGc -3'
miRNA:   3'- gaGGGUGa--GGACGgGUG-GuGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 150647 0.68 0.489936
Target:  5'- gUCUCGCggggggcgUCCUGCCCuCCGCCgCCGc -3'
miRNA:   3'- gAGGGUG--------AGGACGGGuGGUGGgGGUc -5'
5106 3' -62.7 NC_001798.1 + 150155 0.67 0.527178
Target:  5'- -aCCCGCgCCUcuuccgggggcgGgCCGCCGCCCCCu- -3'
miRNA:   3'- gaGGGUGaGGA------------CgGGUGGUGGGGGuc -5'
5106 3' -62.7 NC_001798.1 + 150061 0.66 0.584831
Target:  5'- --gCCGC-CCUcuugGCCC-CCACCCCCuGg -3'
miRNA:   3'- gagGGUGaGGA----CGGGuGGUGGGGGuC- -5'
5106 3' -62.7 NC_001798.1 + 148879 0.68 0.489936
Target:  5'- cCUCCUcCUCCUcccuucCCCcCCAUCCCCGGc -3'
miRNA:   3'- -GAGGGuGAGGAc-----GGGuGGUGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 148756 0.7 0.402842
Target:  5'- -aCCCGCcagCCaGCCCGcCCACCCaCCAa -3'
miRNA:   3'- gaGGGUGa--GGaCGGGU-GGUGGG-GGUc -5'
5106 3' -62.7 NC_001798.1 + 148655 1.08 0.000767
Target:  5'- cCUCCCACUCCUGCCCACCACCCCCAGg -3'
miRNA:   3'- -GAGGGUGAGGACGGGUGGUGGGGGUC- -5'
5106 3' -62.7 NC_001798.1 + 148480 0.69 0.453967
Target:  5'- uCUCCCucCUCCUuccuCCCACCcguCCCCgGGg -3'
miRNA:   3'- -GAGGGu-GAGGAc---GGGUGGu--GGGGgUC- -5'
5106 3' -62.7 NC_001798.1 + 147932 0.69 0.427953
Target:  5'- -gCCCGua-C-GCCCACCGCCCCCAc -3'
miRNA:   3'- gaGGGUgagGaCGGGUGGUGGGGGUc -5'
5106 3' -62.7 NC_001798.1 + 147334 0.66 0.614155
Target:  5'- uUCCCuuCUCCUcgucuucccccGuCCCGCCGCgCCCCu- -3'
miRNA:   3'- gAGGGu-GAGGA-----------C-GGGUGGUG-GGGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.