Results 61 - 80 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5107 | 3' | -55.4 | NC_001798.1 | + | 30970 | 0.7 | 0.754305 |
Target: 5'- cGGGcgGGGGucGGGCGGggGucgGGcGGGGg -3' miRNA: 3'- -UCCuaCCUU--CCCGUCuuCua-CC-CCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 19774 | 0.7 | 0.754305 |
Target: 5'- aGGGAU--AGGGGCAGgcGgcGGGGAa -3' miRNA: 3'- -UCCUAccUUCCCGUCuuCuaCCCCUc -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 129870 | 0.7 | 0.748469 |
Target: 5'- gAGGAgGGggGuGGUGGccgaaagaaaaggaaGGGGUGGGGGGa -3' miRNA: 3'- -UCCUaCCuuC-CCGUC---------------UUCUACCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 30938 | 0.7 | 0.734706 |
Target: 5'- cGGcgGGGGucGGGCGGggGgcGGGcGGGg -3' miRNA: 3'- uCCuaCCUU--CCCGUCuuCuaCCC-CUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 15484 | 0.7 | 0.734706 |
Target: 5'- cGGGggGGucguGGGGGCuGGuguGGUGGGGGGc -3' miRNA: 3'- -UCCuaCC----UUCCCGuCUu--CUACCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 18231 | 0.71 | 0.653424 |
Target: 5'- uGGGcgGGAAGGGUGGAuGGUuuccGGGGGc -3' miRNA: 3'- -UCCuaCCUUCCCGUCUuCUA----CCCCUc -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 33559 | 0.71 | 0.653424 |
Target: 5'- cGGGUGGGAGGaaGGAGGA--GGGAGa -3' miRNA: 3'- uCCUACCUUCCcgUCUUCUacCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 60996 | 0.71 | 0.653424 |
Target: 5'- cAGGcgGaGGGGGCGGAugacgcggaccGGAUGGGGGu -3' miRNA: 3'- -UCCuaCcUUCCCGUCU-----------UCUACCCCUc -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 8884 | 0.71 | 0.674028 |
Target: 5'- aAGGGcgcUGGcgGAGGGCGGAggcgaAGGUGGGGu- -3' miRNA: 3'- -UCCU---ACC--UUCCCGUCU-----UCUACCCCuc -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 30511 | 0.71 | 0.674028 |
Target: 5'- uGGGUGaGGAGGaaGCGGAAGcgGGaGGGGg -3' miRNA: 3'- uCCUAC-CUUCC--CGUCUUCuaCC-CCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 67184 | 0.71 | 0.674028 |
Target: 5'- aAGGggGGAggagGGGGCGGggGGacagccUGGGGu- -3' miRNA: 3'- -UCCuaCCU----UCCCGUCuuCU------ACCCCuc -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 85279 | 0.71 | 0.674028 |
Target: 5'- gAGGcuucGGggGGGCGGggGccGGGGu- -3' miRNA: 3'- -UCCua--CCuuCCCGUCuuCuaCCCCuc -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 101004 | 0.72 | 0.612074 |
Target: 5'- gGGGA-GGAAGGcGCGGAGGggGGcGGGu -3' miRNA: 3'- -UCCUaCCUUCC-CGUCUUCuaCC-CCUc -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 105804 | 0.72 | 0.622409 |
Target: 5'- gAGGAUGcuuGGcCAGAAGcgGGGGAGg -3' miRNA: 3'- -UCCUACcuuCCcGUCUUCuaCCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 153524 | 0.72 | 0.622409 |
Target: 5'- gGGGGUcGGAGGGGCgucAGggGGUcGGaGGGGc -3' miRNA: 3'- -UCCUA-CCUUCCCG---UCuuCUA-CC-CCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 153562 | 0.72 | 0.622409 |
Target: 5'- gGGGGUcGGAGGGGCgucAGggGGUcGGaGGGGc -3' miRNA: 3'- -UCCUA-CCUUCCCG---UCuuCUA-CC-CCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 6393 | 0.72 | 0.63275 |
Target: 5'- gGGGGccGggGGGCcgGGggGAcGGGGGGa -3' miRNA: 3'- -UCCUacCuuCCCG--UCuuCUaCCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 148414 | 0.72 | 0.643091 |
Target: 5'- cGGGGUGGGcgccGGGGCGGggG-UGGGcacGGGc -3' miRNA: 3'- -UCCUACCU----UCCCGUCuuCuACCC---CUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 103645 | 0.72 | 0.643091 |
Target: 5'- aGGGggGGggGGGUGGAAGcgGgcaaGGGAa -3' miRNA: 3'- -UCCuaCCuuCCCGUCUUCuaC----CCCUc -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 95945 | 0.73 | 0.571987 |
Target: 5'- gGGGA-GGggGGGguGAGGAagaaagaacggauucGGGGGGg -3' miRNA: 3'- -UCCUaCCuuCCCguCUUCUa--------------CCCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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