miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5107 3' -55.4 NC_001798.1 + 43962 0.67 0.875154
Target:  5'- gAGGGUGucGGGGCGuGGGucGUGGGGGa -3'
miRNA:   3'- -UCCUACcuUCCCGUcUUC--UACCCCUc -5'
5107 3' -55.4 NC_001798.1 + 44843 0.69 0.792108
Target:  5'- ----cGGAGGGGguGggG-UGGGGGa -3'
miRNA:   3'- uccuaCCUUCCCguCuuCuACCCCUc -5'
5107 3' -55.4 NC_001798.1 + 48536 0.87 0.092553
Target:  5'- gGGGcgGGAGGGGCGGGAGggGcGGGAGg -3'
miRNA:   3'- -UCCuaCCUUCCCGUCUUCuaC-CCCUC- -5'
5107 3' -55.4 NC_001798.1 + 48563 0.87 0.092553
Target:  5'- gGGGcgGGAGGGGCGGGAGggGcGGGAGg -3'
miRNA:   3'- -UCCuaCCUUCCCGUCUUCuaC-CCCUC- -5'
5107 3' -55.4 NC_001798.1 + 48590 0.87 0.092553
Target:  5'- gGGGcgGGAGGGGCGGGAGggGcGGGAGg -3'
miRNA:   3'- -UCCuaCCUUCCCGUCUUCuaC-CCCUC- -5'
5107 3' -55.4 NC_001798.1 + 48617 0.87 0.092553
Target:  5'- gGGGcgGGAGGGGCGGGAGggGcGGGAGg -3'
miRNA:   3'- -UCCuaCCUUCCCGUCUUCuaC-CCCUC- -5'
5107 3' -55.4 NC_001798.1 + 48679 0.66 0.914821
Target:  5'- cGGG-GGAcGGGCcgcccGGAGcGGUGGGGAa -3'
miRNA:   3'- uCCUaCCUuCCCG-----UCUU-CUACCCCUc -5'
5107 3' -55.4 NC_001798.1 + 54926 0.67 0.882346
Target:  5'- ----cGGu-GGGC-GAGGAUGGGGGGc -3'
miRNA:   3'- uccuaCCuuCCCGuCUUCUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 56188 0.68 0.844228
Target:  5'- gGGGGUGGGGuGGGguGugguGGGUacgGGGGAc -3'
miRNA:   3'- -UCCUACCUU-CCCguCu---UCUA---CCCCUc -5'
5107 3' -55.4 NC_001798.1 + 57515 0.68 0.835988
Target:  5'- cGGGGuUGGggGGGCguGGGuguGGUucGGGGGGc -3'
miRNA:   3'- -UCCU-ACCuuCCCG--UCUu--CUA--CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 60996 0.71 0.653424
Target:  5'- cAGGcgGaGGGGGCGGAugacgcggaccGGAUGGGGGu -3'
miRNA:   3'- -UCCuaCcUUCCCGUCU-----------UCUACCCCUc -5'
5107 3' -55.4 NC_001798.1 + 61152 0.67 0.88931
Target:  5'- gAGGGcucggGGGAGGG-GGAGGG-GGGGAa -3'
miRNA:   3'- -UCCUa----CCUUCCCgUCUUCUaCCCCUc -5'
5107 3' -55.4 NC_001798.1 + 64055 0.67 0.867741
Target:  5'- cGGGGcacUGGGAGGuGUAGAaguaccgcucggGGGUGGGGc- -3'
miRNA:   3'- -UCCU---ACCUUCC-CGUCU------------UCUACCCCuc -5'
5107 3' -55.4 NC_001798.1 + 67184 0.71 0.674028
Target:  5'- aAGGggGGAggagGGGGCGGggGGacagccUGGGGu- -3'
miRNA:   3'- -UCCuaCCU----UCCCGUCuuCU------ACCCCuc -5'
5107 3' -55.4 NC_001798.1 + 68139 0.66 0.908802
Target:  5'- gAGGgcGGAguugguguguAGGGgGGggGAaGuGGGAGg -3'
miRNA:   3'- -UCCuaCCU----------UCCCgUCuuCUaC-CCCUC- -5'
5107 3' -55.4 NC_001798.1 + 69650 0.8 0.240307
Target:  5'- uGGG-GGggGGuGguGGAGGUGGGGAGg -3'
miRNA:   3'- uCCUaCCuuCC-CguCUUCUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 84381 0.66 0.914821
Target:  5'- uGGAacUGGAaggcacaucucgAGGGCGGGuuGGAUGGcGAGu -3'
miRNA:   3'- uCCU--ACCU------------UCCCGUCU--UCUACCcCUC- -5'
5107 3' -55.4 NC_001798.1 + 85279 0.71 0.674028
Target:  5'- gAGGcuucGGggGGGCGGggGccGGGGu- -3'
miRNA:   3'- -UCCua--CCuuCCCGUCuuCuaCCCCuc -5'
5107 3' -55.4 NC_001798.1 + 85812 0.75 0.425957
Target:  5'- cGGGGgcgaugacggGGggGGGCGGggGcgGGcGGGGg -3'
miRNA:   3'- -UCCUa---------CCuuCCCGUCuuCuaCC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 88034 0.73 0.540572
Target:  5'- uGGccgGGGAGGGCAGGGccGcUGGGGGGg -3'
miRNA:   3'- uCCua-CCUUCCCGUCUU--CuACCCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.