miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5107 3' -55.4 NC_001798.1 + 30030 0.7 0.734706
Target:  5'- aGGGAggcaGGGAGGagcccgagaGCGGggGAcagGGGGGGa -3'
miRNA:   3'- -UCCUa---CCUUCC---------CGUCuuCUa--CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 30511 0.71 0.674028
Target:  5'- uGGGUGaGGAGGaaGCGGAAGcgGGaGGGGg -3'
miRNA:   3'- uCCUAC-CUUCC--CGUCUUCuaCC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 30938 0.7 0.734706
Target:  5'- cGGcgGGGGucGGGCGGggGgcGGGcGGGg -3'
miRNA:   3'- uCCuaCCUU--CCCGUCuuCuaCCC-CUC- -5'
5107 3' -55.4 NC_001798.1 + 30970 0.7 0.754305
Target:  5'- cGGGcgGGGGucGGGCGGggGucgGGcGGGGg -3'
miRNA:   3'- -UCCuaCCUU--CCCGUCuuCua-CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 31003 0.7 0.754305
Target:  5'- cGGGcgGGGGucGGGCGGggGucgGGcGGGGg -3'
miRNA:   3'- -UCCuaCCUU--CCCGUCuuCua-CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 31036 0.7 0.754305
Target:  5'- cGGGcgGGGGucGGGCGGggGucgGGcGGGGg -3'
miRNA:   3'- -UCCuaCCUU--CCCGUCuuCua-CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 31790 0.7 0.714743
Target:  5'- cGGGUcGGGAGGGcCGGgcGcgGaGGGAGg -3'
miRNA:   3'- uCCUA-CCUUCCC-GUCuuCuaC-CCCUC- -5'
5107 3' -55.4 NC_001798.1 + 32893 0.7 0.734706
Target:  5'- gAGGcgccucGGGGGCAGGgggAGGUGGGGGGg -3'
miRNA:   3'- -UCCuacc--UUCCCGUCU---UCUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 32937 0.74 0.510741
Target:  5'- gAGGAgacaGGAagugGGGGUGGGAG-UGGGGGGg -3'
miRNA:   3'- -UCCUa---CCU----UCCCGUCUUCuACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 33154 0.83 0.164958
Target:  5'- gGGGAUGGggGGGaagggaGGAGGAggaGGGGGGg -3'
miRNA:   3'- -UCCUACCuuCCCg-----UCUUCUa--CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 33396 0.78 0.300911
Target:  5'- cAGGAgUGGGAGGGCgccuggcucggggagGGAGGAgGGGGGGg -3'
miRNA:   3'- -UCCU-ACCUUCCCG---------------UCUUCUaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 33559 0.71 0.653424
Target:  5'- cGGGUGGGAGGaaGGAGGA--GGGAGa -3'
miRNA:   3'- uCCUACCUUCCcgUCUUCUacCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 34079 0.66 0.902542
Target:  5'- uGGGGUuguugGGggGGGguGAccGGcgcGUGGGGGc -3'
miRNA:   3'- -UCCUA-----CCuuCCCguCU--UC---UACCCCUc -5'
5107 3' -55.4 NC_001798.1 + 34184 0.79 0.291185
Target:  5'- uGGGUGGAAGGGaagaggaAGGAGAaagGGGGGGu -3'
miRNA:   3'- uCCUACCUUCCCg------UCUUCUa--CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 34619 0.75 0.462655
Target:  5'- aAGGgcGGcGGcGGCGGggGggGGGGGGg -3'
miRNA:   3'- -UCCuaCCuUC-CCGUCuuCuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 35091 0.7 0.704649
Target:  5'- gAGGcgGGGgaaaaaAGGG-GGAAGAgagGGGGAGg -3'
miRNA:   3'- -UCCuaCCU------UCCCgUCUUCUa--CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 36089 0.78 0.298107
Target:  5'- uAGG-UGGguGGGCGGguGGUGGGGGGg -3'
miRNA:   3'- -UCCuACCuuCCCGUCuuCUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 36145 0.69 0.782856
Target:  5'- -cGGUGGGgcgcGGcGGCGGucgGGGUGGGGGGa -3'
miRNA:   3'- ucCUACCU----UC-CCGUCu--UCUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 36703 0.67 0.875154
Target:  5'- ----gGGGAGGGgAGGAcGcgGGGGAGc -3'
miRNA:   3'- uccuaCCUUCCCgUCUU-CuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 40444 0.66 0.920598
Target:  5'- gGGGGUgcGGAAGcacGCGGuAGGGUGGGGuGu -3'
miRNA:   3'- -UCCUA--CCUUCc--CGUC-UUCUACCCCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.