miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5107 3' -55.4 NC_001798.1 + 101004 0.72 0.612074
Target:  5'- gGGGA-GGAAGGcGCGGAGGggGGcGGGu -3'
miRNA:   3'- -UCCUaCCUUCC-CGUCUUCuaCC-CCUc -5'
5107 3' -55.4 NC_001798.1 + 153524 0.72 0.622409
Target:  5'- gGGGGUcGGAGGGGCgucAGggGGUcGGaGGGGc -3'
miRNA:   3'- -UCCUA-CCUUCCCG---UCuuCUA-CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 105804 0.72 0.622409
Target:  5'- gAGGAUGcuuGGcCAGAAGcgGGGGAGg -3'
miRNA:   3'- -UCCUACcuuCCcGUCUUCuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 153562 0.72 0.622409
Target:  5'- gGGGGUcGGAGGGGCgucAGggGGUcGGaGGGGc -3'
miRNA:   3'- -UCCUA-CCUUCCCG---UCuuCUA-CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 6393 0.72 0.63275
Target:  5'- gGGGGccGggGGGCcgGGggGAcGGGGGGa -3'
miRNA:   3'- -UCCUacCuuCCCG--UCuuCUaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 148414 0.72 0.643091
Target:  5'- cGGGGUGGGcgccGGGGCGGggG-UGGGcacGGGc -3'
miRNA:   3'- -UCCUACCU----UCCCGUCuuCuACCC---CUC- -5'
5107 3' -55.4 NC_001798.1 + 103645 0.72 0.643091
Target:  5'- aGGGggGGggGGGUGGAAGcgGgcaaGGGAa -3'
miRNA:   3'- -UCCuaCCuuCCCGUCUUCuaC----CCCUc -5'
5107 3' -55.4 NC_001798.1 + 60996 0.71 0.653424
Target:  5'- cAGGcgGaGGGGGCGGAugacgcggaccGGAUGGGGGu -3'
miRNA:   3'- -UCCuaCcUUCCCGUCU-----------UCUACCCCUc -5'
5107 3' -55.4 NC_001798.1 + 33559 0.71 0.653424
Target:  5'- cGGGUGGGAGGaaGGAGGA--GGGAGa -3'
miRNA:   3'- uCCUACCUUCCcgUCUUCUacCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 18231 0.71 0.653424
Target:  5'- uGGGcgGGAAGGGUGGAuGGUuuccGGGGGc -3'
miRNA:   3'- -UCCuaCCUUCCCGUCUuCUA----CCCCUc -5'
5107 3' -55.4 NC_001798.1 + 8884 0.71 0.674028
Target:  5'- aAGGGcgcUGGcgGAGGGCGGAggcgaAGGUGGGGu- -3'
miRNA:   3'- -UCCU---ACC--UUCCCGUCU-----UCUACCCCuc -5'
5107 3' -55.4 NC_001798.1 + 30511 0.71 0.674028
Target:  5'- uGGGUGaGGAGGaaGCGGAAGcgGGaGGGGg -3'
miRNA:   3'- uCCUAC-CUUCC--CGUCUUCuaCC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 85279 0.71 0.674028
Target:  5'- gAGGcuucGGggGGGCGGggGccGGGGu- -3'
miRNA:   3'- -UCCua--CCuuCCCGUCuuCuaCCCCuc -5'
5107 3' -55.4 NC_001798.1 + 67184 0.71 0.674028
Target:  5'- aAGGggGGAggagGGGGCGGggGGacagccUGGGGu- -3'
miRNA:   3'- -UCCuaCCU----UCCCGUCuuCU------ACCCCuc -5'
5107 3' -55.4 NC_001798.1 + 35091 0.7 0.704649
Target:  5'- gAGGcgGGGgaaaaaAGGG-GGAAGAgagGGGGAGg -3'
miRNA:   3'- -UCCuaCCU------UCCCgUCUUCUa--CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 31790 0.7 0.714743
Target:  5'- cGGGUcGGGAGGGcCGGgcGcgGaGGGAGg -3'
miRNA:   3'- uCCUA-CCUUCCC-GUCuuCuaC-CCCUC- -5'
5107 3' -55.4 NC_001798.1 + 142827 0.7 0.714743
Target:  5'- cGGG-GGAAGGGUAGggGGaaaagaaaGGGGAc -3'
miRNA:   3'- uCCUaCCUUCCCGUCuuCUa-------CCCCUc -5'
5107 3' -55.4 NC_001798.1 + 6458 0.7 0.724765
Target:  5'- gGGGAcGGggGGaCGGggGGacGGGGGGa -3'
miRNA:   3'- -UCCUaCCuuCCcGUCuuCUa-CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 6490 0.7 0.724765
Target:  5'- gGGGAcGGggGGaCGGggGGacGGGGGGa -3'
miRNA:   3'- -UCCUaCCuuCCcGUCuuCUa-CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 112474 0.7 0.724765
Target:  5'- uGGGGUGGu-GGGaGGAGGGUGguGGGAGc -3'
miRNA:   3'- -UCCUACCuuCCCgUCUUCUAC--CCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.