miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5107 3' -55.4 NC_001798.1 + 23 0.66 0.920598
Target:  5'- gGGGAgucaacccccGGggGGGguGuuuuuUGGGGGGg -3'
miRNA:   3'- -UCCUa---------CCuuCCCguCuucu-ACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 40444 0.66 0.920598
Target:  5'- gGGGGUgcGGAAGcacGCGGuAGGGUGGGGuGu -3'
miRNA:   3'- -UCCUA--CCUUCc--CGUC-UUCUACCCCuC- -5'
5107 3' -55.4 NC_001798.1 + 125661 0.66 0.920598
Target:  5'- gAGGcgGGGGcGGCuGAGGucaGGGGGGu -3'
miRNA:   3'- -UCCuaCCUUcCCGuCUUCua-CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 154361 0.66 0.920598
Target:  5'- gGGGAgucaacccccGGggGGGguGuuuuuUGGGGGGg -3'
miRNA:   3'- -UCCUa---------CCuuCCCguCuucu-ACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 121720 0.66 0.924497
Target:  5'- -cGAcGGAGGcGGCGGcccaccugucccugGGGAUGGGGAa -3'
miRNA:   3'- ucCUaCCUUC-CCGUC--------------UUCUACCCCUc -5'
5107 3' -55.4 NC_001798.1 + 14310 0.66 0.896043
Target:  5'- cGGAUGaGuGGGGGguGc--GUGGGGAGg -3'
miRNA:   3'- uCCUAC-C-UUCCCguCuucUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 61152 0.67 0.88931
Target:  5'- gAGGGcucggGGGAGGG-GGAGGG-GGGGAa -3'
miRNA:   3'- -UCCUa----CCUUCCCgUCUUCUaCCCCUc -5'
5107 3' -55.4 NC_001798.1 + 6271 0.68 0.852272
Target:  5'- cGGggGGAcGGGCcgGGggGAcgggccGGGGGGa -3'
miRNA:   3'- uCCuaCCUuCCCG--UCuuCUa-----CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 6310 0.68 0.852272
Target:  5'- cGGggGGAcGGGCcgGGggGAcgggccGGGGGGa -3'
miRNA:   3'- uCCuaCCUuCCCG--UCuuCUa-----CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 14990 0.68 0.852272
Target:  5'- uGGgcGGggGGGC-GAGGcguguUGGGGGc -3'
miRNA:   3'- uCCuaCCuuCCCGuCUUCu----ACCCCUc -5'
5107 3' -55.4 NC_001798.1 + 26524 0.67 0.860112
Target:  5'- cGGcgGGcGGcGGCGuGGAGGUGGuGGGGa -3'
miRNA:   3'- uCCuaCCuUC-CCGU-CUUCUACC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 27227 0.67 0.867741
Target:  5'- nGGcgcGGggGaGGCGGccGcgGGGGAGg -3'
miRNA:   3'- uCCua-CCuuC-CCGUCuuCuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 64055 0.67 0.867741
Target:  5'- cGGGGcacUGGGAGGuGUAGAaguaccgcucggGGGUGGGGc- -3'
miRNA:   3'- -UCCU---ACCUUCC-CGUCU------------UCUACCCCuc -5'
5107 3' -55.4 NC_001798.1 + 36703 0.67 0.875154
Target:  5'- ----gGGGAGGGgAGGAcGcgGGGGAGc -3'
miRNA:   3'- uccuaCCUUCCCgUCUU-CuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 43962 0.67 0.875154
Target:  5'- gAGGGUGucGGGGCGuGGGucGUGGGGGa -3'
miRNA:   3'- -UCCUACcuUCCCGUcUUC--UACCCCUc -5'
5107 3' -55.4 NC_001798.1 + 11666 0.67 0.882346
Target:  5'- gGGGGUcGGGucucGGGgGGAGGAcGGGGGu -3'
miRNA:   3'- -UCCUA-CCUu---CCCgUCUUCUaCCCCUc -5'
5107 3' -55.4 NC_001798.1 + 146095 0.67 0.882346
Target:  5'- gAGGcgGGc-GGGCGaAGGAaGGGGGGg -3'
miRNA:   3'- -UCCuaCCuuCCCGUcUUCUaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 6611 0.67 0.882346
Target:  5'- cGGggGGAcGGGgGGAcgGGccGGGGGGa -3'
miRNA:   3'- uCCuaCCUuCCCgUCU--UCuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 54926 0.67 0.882346
Target:  5'- ----cGGu-GGGC-GAGGAUGGGGGGc -3'
miRNA:   3'- uccuaCCuuCCCGuCUUCUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 29908 0.67 0.88931
Target:  5'- gGGGGUGGucgcGGGCGGuGGGcucGGGGGc -3'
miRNA:   3'- -UCCUACCuu--CCCGUCuUCUa--CCCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.